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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7442-RA through 18771 annotations produced 1 hits



(CG7442):

Annotation Number : CG7442
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037140
Gbrowse : chr3L:21928062-21931617 (+) // 100.0 //
Probeset : 1637669_at
Accessions : protein= NP_649370;, nucleotide= NM_141113;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0037140.
Homophila reports that CG7442 is a close match (6e-27) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
TRiP has 1 RNAi stocks for FBgn0037140 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 ± 64 of 4 4.00Up
Head65 ± 64 of 4 2.20Up
Eye17 ± 24 of 4 0.61Down
Thoracicoabdominal ganglion100 ± 24 of 4 3.40Up
Salivary gland106 ± 64 of 4 3.60Up
Crop15 ± 24 of 4 0.50Down
Midgut189 ± 104 of 4 6.40Up
Tubule11 ± 32 of 4 0.40Down
Hindgut100 ± 84 of 4 3.40Up
Heart35 ± 34 of 4 1.20None
Fat body84 ± 104 of 4 2.86Up
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands183 ± 104 of 4 6.20Up
Virgin spermatheca58 ± 34 of 4 1.96Up
Mated spermatheca43 ± 94 of 4 1.47None
Adult carcass57 ± 24 of 4 1.90Up
Larval CNS35 ± 54 of 4 1.20None
Larval Salivary gland9 ± 22 of 4 0.31Down
Larval midgut64 ± 84 of 4 2.19Up
Larval tubule8 ± 22 of 4 0.30Down
Larval hindgut15 ± 24 of 4 0.53Down
Larval fat body133 ± 44 of 4 4.50Up
Larval trachea27 ± 64 of 4 0.92None
Larval carcass22 ± 54 of 4 0.76None
S2 cells (growing)11 ± 14 of 4 0.38Down
Whole fly29 ± 34 of 4

Looking for CG7442-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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