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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7447-RA through 18771 annotations produced 1 hits



N-like (slow):

Annotation Number : CG7447
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035539
Gbrowse : chr3L:4384454-4403186 (+) // 100.0 //
Probeset : 1631441_s_at
Accessions : protein= NP_647898; /// NP_788461;, nucleotide= NM_139641; /// NM_176283;
Pathway : 0005927 // muscle tendon junction // inferred from mutant phenotype
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0035539.
BDGP gene expression has embryonic in situ data for CG7447: 47 pix of staining in 9 body parts.
Homophila reports that CG7447 is a close match (5e-11) to human gene ARMD3;FBLN5 (NP_006320), a gene associated with Cutis laxa, autosomal dominant, 123700 (3);Cutis laxa, autosomal recessive, 219100 (3);Macular degeneration, age-related, 3, 608895 (3).
BioGrid reports that CG7447 interacts with CG7954 CG8854 CG9911 .
VDRC has 3 RNAi stocks for FBgn0035539 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 44 of 4 1.90Up
Head77 ± 14 of 4 2.20Up
Eye78 ± 44 of 4 2.26Up
Thoracicoabdominal ganglion67 ± 84 of 4 1.90Up
Salivary gland15 ± 12 of 4 0.44Down
Crop88 ± 34 of 4 2.60Up
Midgut9 ± 00 of 4 0.30Down
Tubule7 ± 10 of 4 0.20Down
Hindgut15 ± 14 of 4 0.40Down
Heart104 ± 104 of 4 3.02Up
Fat body236 ± 324 of 4 6.82Up
Ovary36 ± 24 of 4 1.10None
Testis16 ± 14 of 4 0.50Down
Male accessory glands3 ± 00 of 4 0.10Down
Virgin spermatheca120 ± 144 of 4 3.47Up
Mated spermatheca240 ± 224 of 4 6.95Up
Adult carcass84 ± 54 of 4 2.40Up
Larval CNS27 ± 34 of 4 0.81Down
Larval Salivary gland20 ± 24 of 4 0.59Down
Larval midgut31 ± 64 of 4 0.91None
Larval tubule365 ± 314 of 410.50Up
Larval hindgut21 ± 34 of 4 0.63Down
Larval fat body107 ± 164 of 4 3.10Up
Larval trachea30 ± 64 of 4 0.87None
Larval carcass98 ± 514 of 4 2.85None
S2 cells (growing)33 ± 04 of 4 0.98None
Whole fly34 ± 14 of 4

Looking for CG7447-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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