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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7452-RA through 18771 annotations produced 1 hits



syntaxin (Syx17):

Annotation Number : CG7452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035540
Gbrowse : chr3L:4403499-4405169 (+) // 100.0 //
Probeset : 1628202_at
Accessions : protein= NP_523926;, nucleotide= NM_079202;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // i
FlyMine data for FBgn0035540.
TRiP has 1 RNAi stocks for FBgn0035540 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035540 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain246 64 of 4 2.20Up
Head148 74 of 4 1.30Up
Eye206 84 of 4 1.84Up
Thoracicoabdominal ganglion239 54 of 4 2.10Up
Salivary gland122 34 of 4 1.09None
Crop148 44 of 4 1.30Up
Midgut95 44 of 4 0.90None
Tubule144 24 of 4 1.30Up
Hindgut117 54 of 4 1.00None
Heart202 94 of 4 1.80Up
Fat body117 184 of 4 1.05None
Ovary180 44 of 4 1.60Up
Testis104 44 of 4 0.90None
Male accessory glands127 84 of 4 1.10None
Virgin spermatheca215 94 of 4 1.92Up
Mated spermatheca150 114 of 4 1.34Up
Adult carcass151 94 of 4 1.40Up
Larval CNS82 74 of 4 0.74Down
Larval Salivary gland81 54 of 4 0.73Down
Larval midgut109 164 of 4 0.98None
Larval tubule118 54 of 4 1.10None
Larval hindgut85 94 of 4 0.76None
Larval fat body115 64 of 4 1.00None
Larval trachea79 174 of 4 0.71Down
Larval carcass72 134 of 4 0.65None
S2 cells (growing)81 24 of 4 0.73Down
Whole fly112 54 of 4

Looking for CG7452-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime