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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7461-RA through 18771 annotations produced 1 hits



Drosophila very-long chain ACAD (CG7461):

Annotation Number : CG7461
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034432
Gbrowse : chr2R:15192644-15194689 (+) // 100.0 //
Probeset : 1623788_at
Accessions : protein= NP_611409;, nucleotide= NM_137565;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activit
FlyMine data for FBgn0034432.
BDGP gene expression has embryonic in situ data for CG7461: 11 pix of staining in 4 body parts.
Homophila reports that CG7461 is a close match (1e-32) to human gene GCDH (NP_039663), a gene associated with Glutaricaciduria, type I, 231670 (3).
VDRC has 3 RNAi stocks for FBgn0034432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain349 ± 94 of 4 0.40Down
Head1547 ± 824 of 4 1.60Up
Eye720 ± 634 of 4 0.76Down
Thoracicoabdominal ganglion460 ± 134 of 4 0.50Down
Salivary gland2040 ± 954 of 4 2.16Up
Crop2289 ± 854 of 4 2.40Up
Midgut1783 ± 434 of 4 1.90Up
Tubule979 ± 224 of 4 1.00None
Hindgut1425 ± 154 of 4 1.50Up
Heart2911 ± 1144 of 4 3.08Up
Fat body3962 ± 3344 of 4 4.19Up
Ovary800 ± 144 of 4 0.80None
Testis98 ± 54 of 4 0.10Down
Male accessory glands756 ± 384 of 4 0.80Down
Virgin spermatheca4417 ± 1394 of 4 4.67Up
Mated spermatheca4485 ± 1984 of 4 4.75Up
Adult carcass2342 ± 124 of 4 2.50Up
Larval CNS501 ± 154 of 4 0.53Down
Larval Salivary gland861 ± 514 of 4 0.91None
Larval midgut1049 ± 314 of 4 1.11None
Larval tubule544 ± 134 of 4 0.60Down
Larval hindgut992 ± 34 of 4 1.05None
Larval fat body1280 ± 1114 of 4 1.40Up
Larval trachea966 ± 184 of 4 1.02None
Larval carcass1182 ± 464 of 4 1.25Up
S2 cells (growing)881 ± 144 of 4 0.93None
Whole fly945 ± 554 of 4

Looking for CG7461-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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