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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7465-RA through 18771 annotations produced 1 hits



(CG7465):

Annotation Number : CG7465
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035551
Gbrowse : chr3L:4480281-4481487 (+) // 100.0 //
Probeset : 1626616_at
Accessions : protein= NP_647909;, nucleotide= NM_139652;
FlyMine data for FBgn0035551.
BDGP gene expression has embryonic in situ data for CG7465: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.30None
Head3 10 of 4 0.20None
Eye15 42 of 4 0.67None
Thoracicoabdominal ganglion9 40 of 4 0.40None
Salivary gland19 30 of 4 0.84None
Crop12 00 of 4 0.50None
Midgut9 30 of 4 0.40None
Tubule5 10 of 4 0.20Down
Hindgut13 30 of 4 0.60None
Heart8 10 of 4 0.36None
Fat body13 50 of 4 0.58None
Ovary7 00 of 4 0.30None
Testis7 11 of 4 0.30None
Male accessory glands9 20 of 4 0.40None
Virgin spermatheca5 20 of 4 0.23None
Mated spermatheca8 10 of 4 0.38None
Adult carcass10 20 of 4 0.50None
Larval CNS71 1113 of 4 3.17None
Larval Salivary gland12 20 of 4 0.57None
Larval midgut29 71 of 4 1.29None
Larval tubule7 10 of 4 0.30None
Larval hindgut55 124 of 4 2.47None
Larval fat body23 111 of 4 1.10None
Larval trachea837 924 of 437.12Up
Larval carcass1018 594 of 445.16Up
S2 cells (growing)14 21 of 4 0.65None
Whole fly22 112 of 4

Looking for CG7465-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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