Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7471-RA through 18771 annotations produced 1 hits



Suppressor of variegation 326 (Rpd3):

Annotation Number : CG7471
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015805
Gbrowse : chr3L:4626716-4629471 (+) // 100.0 //
Probeset : 1633700_at
Accessions : protein= NP_647918;, nucleotide= NM_139661;
Pathway : 0000118 // histone deacetylase complex // traceable author statement /// 0000785 // chromatin // inferred from direct as
Interpro : 0003714 // transcription corepressor activity // non-traceable author statement /// 0004407 // histone deacetylase activ
FlyMine data for FBgn0015805.
BDGP gene expression has embryonic in situ data for Rpd3: 17 pix of staining in 12 body parts.
BioGrid reports that CG7471 interacts with CG32443 CG32443 CG9375 CG1849 CG18085 CG5109 CG6502 CG5109 CG6502 CG14941 CG14941 CG32443 .
TRiP has 4 RNAi stocks for FBgn0015805 available for purchase.
VDRC has 4 RNAi stocks for FBgn0015805 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 24 of 4 0.70Down
Head82 24 of 4 0.40Down
Eye54 34 of 4 0.24Down
Thoracicoabdominal ganglion111 34 of 4 0.50Down
Salivary gland123 104 of 4 0.53Down
Crop141 44 of 4 0.60Down
Midgut77 44 of 4 0.30Down
Tubule170 94 of 4 0.70Down
Hindgut117 24 of 4 0.50Down
Heart89 24 of 4 0.38Down
Fat body76 94 of 4 0.33Down
Ovary448 34 of 4 1.90Up
Testis20 24 of 4 0.10Down
Male accessory glands133 14 of 4 0.60Down
Virgin spermatheca71 44 of 4 0.31Down
Mated spermatheca79 44 of 4 0.34Down
Adult carcass63 64 of 4 0.30Down
Larval CNS692 264 of 4 2.99Up
Larval Salivary gland323 124 of 4 1.40Up
Larval midgut49 54 of 4 0.21Down
Larval tubule124 34 of 4 0.50Down
Larval hindgut142 64 of 4 0.62Down
Larval fat body70 94 of 4 0.30Down
Larval trachea224 284 of 4 0.97None
Larval carcass157 54 of 4 0.68Down
S2 cells (growing)345 124 of 4 1.49Up
Whole fly231 164 of 4

Looking for CG7471-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime