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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7478-RA through 18771 annotations produced 1 hits



79B Actin (Act79B):

Annotation Number : CG7478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000045
Gbrowse : chr3L:21978333-21980290 (+) // 100.0 //
Probeset : 1624830_at
Accessions : protein= NP_524210;, nucleotide= NM_079486;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskelet
FlyMine data for FBgn0000045.
Homophila reports that CG7478 is a close match (0) to human gene ACTC1;CMD1R;CMH11 (NP_005150), a gene associated with Cardiomyopathy, dilated, 1R (3);Cardiomyopathy, familial hypertrophic, 11, 612098 (3).
BioGrid reports that CG7478 interacts with CG9797 .
TRiP has 1 RNAi stocks for FBgn0000045 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000045 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain220 ± 44 of 4 0.20Down
Head217 ± 184 of 4 0.20Down
Eye18 ± 53 of 4 0.02Down
Thoracicoabdominal ganglion152 ± 234 of 4 0.10Down
Salivary gland21 ± 44 of 4 0.02Down
Crop11 ± 12 of 4 0.00Down
Midgut22 ± 24 of 4 0.00Down
Tubule13 ± 03 of 4 0.00Down
Hindgut22 ± 54 of 4 0.00Down
Heart17 ± 44 of 4 0.02Down
Fat body66 ± 204 of 4 0.06Down
Ovary5 ± 03 of 4 0.00Down
Testis11 ± 04 of 4 0.00Down
Male accessory glands16 ± 14 of 4 0.00Down
Virgin spermatheca18 ± 34 of 4 0.02Down
Mated spermatheca16 ± 24 of 4 0.01Down
Adult carcass4318 ± 3654 of 4 4.00Up
Larval CNS9 ± 14 of 4 0.01Down
Larval Salivary gland15 ± 03 of 4 0.01Down
Larval midgut24 ± 34 of 4 0.02Down
Larval tubule9 ± 03 of 4 0.00Down
Larval hindgut10 ± 12 of 4 0.01Down
Larval fat body15 ± 23 of 4 0.00Down
Larval trachea7 ± 42 of 4 0.01Down
Larval carcass13 ± 03 of 4 0.01Down
S2 cells (growing)9 ± 24 of 4 0.01Down
Whole fly1078 ± 784 of 4

Looking for CG7478-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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