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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7484-RB through 18771 annotations produced 1 hits



(CG7484):

Annotation Number : CG7484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036745
Gbrowse : chr3L:17647730-17648750 (+) // 100.0 //
Probeset : 1628883_at
Accessions : protein= NP_649000;, nucleotide= NM_140743;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0015036 // disulfide oxidoreductase activity // inf
FlyMine data for FBgn0036745.
VDRC has 2 RNAi stocks for FBgn0036745 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain352 84 of 4 1.60Up
Head467 294 of 4 2.20Up
Eye1043 324 of 4 4.86Up
Thoracicoabdominal ganglion497 264 of 4 2.30Up
Salivary gland1156 664 of 4 5.38Up
Crop299 154 of 4 1.40Up
Midgut295 104 of 4 1.40Up
Tubule163 184 of 4 0.80Down
Hindgut278 124 of 4 1.30Up
Heart444 324 of 4 2.07Up
Fat body455 304 of 4 2.12Up
Ovary316 144 of 4 1.50Up
Testis177 104 of 4 0.80None
Male accessory glands1266 1164 of 4 5.90Up
Virgin spermatheca389 44 of 4 1.81Up
Mated spermatheca372 294 of 4 1.74Up
Adult carcass309 84 of 4 1.40Up
Larval CNS456 154 of 4 2.13Up
Larval Salivary gland830 154 of 4 3.87Up
Larval midgut246 114 of 4 1.15None
Larval tubule482 224 of 4 2.20Up
Larval hindgut312 124 of 4 1.45Up
Larval fat body205 224 of 4 1.00None
Larval trachea372 444 of 4 1.73Up
Larval carcass237 204 of 4 1.11None
S2 cells (growing)631 124 of 4 2.94Up
Whole fly214 154 of 4

Looking for CG7484-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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