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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7490-RA through 18771 annotations produced 1 hits



Apurinic endonuclease 3 (RpLP0):

Annotation Number : CG7490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000100
Gbrowse : chr3L:22069141-22070588 (+) // 100.0 //
Probeset : 1637546_at
Accessions : protein= NP_524211;, nucleotide= NM_079487;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0000100.
BDGP gene expression has embryonic in situ data for RpP0: 8 pix of staining in 1 body parts.
BioGrid reports that CG7490 interacts with CG7641 CG9796 CG4261 CG2707 CG2759 CG2759 .
TRiP has 1 RNAi stocks for FBgn0000100 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3008 ± 644 of 4 0.70Down
Head4712 ± 1714 of 4 1.10None
Eye5523 ± 1144 of 4 1.29Up
Thoracicoabdominal ganglion3891 ± 514 of 4 0.90None
Salivary gland9254 ± 2814 of 4 2.16Up
Crop6556 ± 3354 of 4 1.50Up
Midgut5077 ± 1364 of 4 1.20Up
Tubule5919 ± 1644 of 4 1.40Up
Hindgut5280 ± 1074 of 4 1.20Up
Heart6325 ± 4254 of 4 1.48Up
Fat body6184 ± 8184 of 4 1.44Up
Ovary3672 ± 394 of 4 0.90None
Testis1022 ± 264 of 4 0.20Down
Male accessory glands9187 ± 3104 of 4 2.10Up
Virgin spermatheca6116 ± 2364 of 4 1.43Up
Mated spermatheca6418 ± 2384 of 4 1.50Up
Adult carcass5674 ± 2754 of 4 1.30Up
Larval CNS2951 ± 1794 of 4 0.69Down
Larval Salivary gland7889 ± 2744 of 4 1.84Up
Larval midgut4502 ± 644 of 4 1.05None
Larval tubule4869 ± 864 of 4 1.10None
Larval hindgut4562 ± 404 of 4 1.07None
Larval fat body8487 ± 10104 of 4 2.00Up
Larval trachea6413 ± 1814 of 4 1.50Up
Larval carcass4853 ± 3134 of 4 1.13None
S2 cells (growing)4471 ± 654 of 4 1.04None
Whole fly4281 ± 2374 of 4

Looking for CG7490-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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