FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7496-RA through 18771 annotations produced 1 hits

PGRP-SD (PGRP-SD):

Annotation Number : CG7496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035806
Gbrowse : chr3L:7644304-7644865 (+) // 100.0 //
Probeset : 1633545_at
Accessions : protein= NP_648145;, nucleotide= NM_139888;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008745 // N-acetylmuramoyl-L-alanine amidase acti
FlyMine data for FBgn0035806.
VDRC has 1 RNAi stocks for FBgn0035806 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	4 of 4	0.20	Down
Head	666 ± 38	4 of 4	6.00	Up
Eye	213 ± 100	4 of 4	1.94	None
Thoracicoabdominal ganglion	22 ± 1	4 of 4	0.20	Down
Salivary gland	28 ± 3	2 of 4	0.26	Down
Crop	27 ± 4	4 of 4	0.20	Down
Midgut	145 ± 13	4 of 4	1.30	None
Tubule	12 ± 2	2 of 4	0.10	Down
Hindgut	61 ± 7	4 of 4	0.60	None
Heart	177 ± 26	4 of 4	1.61	None
Fat body	344 ± 97	4 of 4	3.13	Up
Ovary	6 ± 1	0 of 4	0.10	Down
Testis	9 ± 1	2 of 4	0.10	Down
Male accessory glands	10 ± 1	0 of 4	0.10	Down
Virgin spermatheca	224 ± 18	4 of 4	2.03	Up
Mated spermatheca	167 ± 22	4 of 4	1.52	None
Adult carcass	484 ± 26	4 of 4	4.40	Up
Larval CNS	4 ± 2	1 of 4	0.04	Down
Larval Salivary gland	16 ± 1	4 of 4	0.14	Down
Larval midgut	138 ± 8	4 of 4	1.26	None
Larval tubule	38 ± 10	4 of 4	0.30	Down
Larval hindgut	333 ± 12	4 of 4	3.03	Up
Larval fat body	1575 ± 77	4 of 4	14.30	Up
Larval trachea	33 ± 13	2 of 4	0.30	Down
Larval carcass	14 ± 2	3 of 4	0.14	Down
S2 cells (growing)	184 ± 16	4 of 4	1.68	Up
Whole fly	110 ± 17	4 of 4

Looking for CG7496-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720