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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7503-RA through 18771 annotations produced 1 hits



connectin (Con):

Annotation Number : CG7503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005775
Gbrowse : chr3L:4938414-4976172 (-) // 100.0 //
Probeset : 1639913_at
Accessions : protein= NP_523930;, nucleotide= NM_079206;
Pathway : 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic anno
FlyMine data for FBgn0005775.
Homophila reports that CG7503 is a close match (1e-12) to human gene ASPN;PLAP1 (NP_060150), a gene associated with {Lumbar disc degeneration}, 603932 (3);{Osteoarthritis, susceptibility to}, 165720 (3).
BioGrid reports that CG7503 interacts with CG3665 CG18405 .
TRiP has 1 RNAi stocks for FBgn0005775 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005775 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain512 ± 134 of 438.20Up
Head96 ± 114 of 4 7.20Up
Eye71 ± 124 of 4 5.34Up
Thoracicoabdominal ganglion333 ± 224 of 424.90Up
Salivary gland21 ± 44 of 4 1.58None
Crop12 ± 24 of 4 0.90None
Midgut4 ± 10 of 4 0.30Down
Tubule5 ± 00 of 4 0.40Down
Hindgut10 ± 14 of 4 0.70None
Heart6 ± 13 of 4 0.49Down
Fat body19 ± 44 of 4 1.45None
Ovary2 ± 00 of 4 0.20Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands8 ± 01 of 4 0.60Down
Virgin spermatheca8 ± 03 of 4 0.65Down
Mated spermatheca13 ± 54 of 4 1.04None
Adult carcass5 ± 10 of 4 0.40Down
Larval CNS297 ± 184 of 422.15Up
Larval Salivary gland4 ± 10 of 4 0.31Down
Larval midgut4 ± 00 of 4 0.32Down
Larval tubule5 ± 10 of 4 0.40Down
Larval hindgut3 ± 00 of 4 0.23Down
Larval fat body4 ± 11 of 4 0.40Down
Larval trachea3 ± 13 of 4 0.28Down
Larval carcass6 ± 11 of 4 0.48Down
S2 cells (growing)1 ± 00 of 4 0.11Down
Whole fly13 ± 14 of 4

Looking for CG7503-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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