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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7508-RA through 18771 annotations produced 1 hits



chr3R:4103513-4104996 (+) // 100.0 // (atonal):

Annotation Number : CG7508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640868_at
Accessions : protein= , nucleotide= NP_731223;
Pathway : "0000187 // activation of MAPK activity // traceable author statement /// 0001745 // compound eye morphogenesis // trace
Interpro : DNA-dependent // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // in
FlyMine data for full length.
BioGrid reports that CG7508 interacts with CG3619 CG6494 CG3839 CG2845 CG9375 CG6348 CG6348 CG6348 CG6348 CG10393 CG10393 CG18085 CG10079 CG2411 CG4889 CG3827 CG1004 CG4637 CG4637 CG2125 CG8365 CG3936 CG1044 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 10 of 4 1.40None
Head15 ± 20 of 4 1.50None
Eye7 ± 10 of 4 0.71None
Thoracicoabdominal ganglion10 ± 20 of 4 0.90None
Salivary gland19 ± 50 of 4 1.79None
Crop5 ± 10 of 4 0.50None
Midgut16 ± 20 of 4 1.50None
Tubule11 ± 00 of 4 1.10Up
Hindgut17 ± 20 of 4 1.70None
Heart1 ± 00 of 4 0.13Down
Fat body17 ± 100 of 4 1.61None
Ovary5 ± 00 of 4 0.50None
Testis6 ± 00 of 4 0.60None
Male accessory glands21 ± 10 of 4 2.00Up
Virgin spermatheca13 ± 10 of 4 1.24None
Mated spermatheca14 ± 30 of 4 1.34None
Adult carcass23 ± 20 of 4 2.20Up
Larval CNS36 ± 52 of 4 3.37Up
Larval Salivary gland13 ± 10 of 4 1.28None
Larval midgut20 ± 30 of 4 1.92None
Larval tubule13 ± 10 of 4 1.20None
Larval hindgut10 ± 00 of 4 0.99None
Larval fat body10 ± 10 of 4 1.00None
Larval trachea9 ± 10 of 4 0.88None
Larval carcass25 ± 20 of 4 2.36Up
S2 cells (growing)16 ± 20 of 4 1.58None
Whole fly10 ± 22 of 4

Looking for CG7508-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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