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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7509-RA through 18771 annotations produced 1 hits



(CG7509):

Annotation Number : CG7509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035575
Gbrowse : chr3L:4803076-4805274 (-) // 100.0 //
Probeset : 1634776_at
Accessions : protein= NP_647931;, nucleotide= NM_139674;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0035575.
Homophila reports that CG7509 is a close match (5e-13) to human gene (NP_003256), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0035575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain261 ± 74 of 4101.50Up
Head95 ± 74 of 437.00Up
Eye73 ± 24 of 428.39Up
Thoracicoabdominal ganglion96 ± 74 of 437.50Up
Salivary gland4 ± 30 of 4 1.83None
Crop0 ± 00 of 4 0.30None
Midgut1 ± 00 of 4 0.60None
Tubule3 ± 10 of 4 1.50None
Hindgut1 ± 00 of 4 0.40None
Heart1 ± 00 of 4 0.65None
Fat body0 ± 00 of 4 0.29None
Ovary0 ± 00 of 4 0.10None
Testis4 ± 10 of 4 1.80None
Male accessory glands3 ± 10 of 4 1.30None
Virgin spermatheca3 ± 10 of 4 1.37None
Mated spermatheca1 ± 10 of 4 0.57None
Adult carcass0 ± 00 of 4 0.30None
Larval CNS0 ± 00 of 4 0.21None
Larval Salivary gland3 ± 30 of 4 1.52None
Larval midgut3 ± 10 of 4 1.46None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut1 ± 00 of 4 0.38None
Larval fat body1 ± 00 of 4 0.70None
Larval trachea4 ± 50 of 4 1.62None
Larval carcass2 ± 00 of 4 0.82None
S2 cells (growing)0 ± 00 of 4 0.38None
Whole fly2 ± 10 of 4

Looking for CG7509-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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