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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7514-RA through 18771 annotations produced 1 hits


(CG7514):

Annotation Number : CG7514
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035567
Gbrowse : chr3L:4687566-4688774 (-) // 100.0 //
Probeset : 1625826_at
Accessions : protein= NP_647923;, nucleotide= NM_139666;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0035567.
BDGP gene expression has embryonic in situ data for CG7514: 2 pix of staining in 1 body parts.
Homophila reports that CG7514 is a close match (1e-11) to human gene PHC;SLC25A3 (NP_998776), a gene associated with Micochondrial phosphate carrier deficiency, 610773 (3).
VDRC has 3 RNAi stocks for FBgn0035567 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.10Down
Salivary gland7 ± 30 of 4 0.21Down
Crop5 ± 21 of 4 0.10Down
Midgut7 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.07Down
Fat body6 ± 50 of 4 0.16Down
Ovary3 ± 00 of 4 0.10Down
Testis508 ± 124 of 413.30Up
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.07Down
Mated spermatheca2 ± 00 of 4 0.06Down
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS5 ± 21 of 4 0.13Down
Larval Salivary gland5 ± 10 of 4 0.15Down
Larval midgut7 ± 00 of 4 0.18Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.14Down
Larval fat body36 ± 142 of 4 1.00None
Larval trachea4 ± 30 of 4 0.13Down
Larval carcass3 ± 00 of 4 0.08Down
S2 cells (growing)3 ± 10 of 4 0.10Down
Whole fly38 ± 24 of 4

Looking for CG7514-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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