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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7518-RB through 18771 annotations produced 1 hits



(CG7518):

Annotation Number : CG7518
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038108
Gbrowse : chr3R:8824306-8834127 (+) // 100.0 //
Probeset : 1635116_a_at
Accessions : protein= NP_001163599; /// NP_650250; /// NP_731761;, nucleotide= NM_001170128; /// NM_141993; /// NM_169489;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0038108.
BDGP gene expression has embryonic in situ data for CG7518: 4 pix of staining in 1 body parts.
BioGrid reports that CG7518 interacts with CG9638 CG7641 CG7757 .
VDRC has 3 RNAi stocks for FBgn0038108 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain301 ± 64 of 4 3.50Up
Head83 ± 54 of 4 1.00None
Eye128 ± 64 of 4 1.49Up
Thoracicoabdominal ganglion235 ± 104 of 4 2.70Up
Salivary gland147 ± 84 of 4 1.71Up
Crop103 ± 24 of 4 1.20Up
Midgut48 ± 74 of 4 0.60Down
Tubule57 ± 14 of 4 0.70Down
Hindgut97 ± 14 of 4 1.10Up
Heart74 ± 24 of 4 0.86Down
Fat body62 ± 64 of 4 0.73Down
Ovary169 ± 44 of 4 2.00Up
Testis33 ± 24 of 4 0.40Down
Male accessory glands148 ± 104 of 4 1.70Up
Virgin spermatheca53 ± 24 of 4 0.62Down
Mated spermatheca60 ± 54 of 4 0.70Down
Adult carcass93 ± 124 of 4 1.10None
Larval CNS313 ± 264 of 4 3.62Up
Larval Salivary gland100 ± 14 of 4 1.16Up
Larval midgut66 ± 44 of 4 0.77Down
Larval tubule88 ± 54 of 4 1.00None
Larval hindgut111 ± 54 of 4 1.29Up
Larval fat body60 ± 94 of 4 0.70None
Larval trachea131 ± 34 of 4 1.53Up
Larval carcass148 ± 64 of 4 1.71Up
S2 cells (growing)239 ± 14 of 4 2.77Up
Whole fly86 ± 34 of 4

Looking for CG7518-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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