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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7520-RA through 18771 annotations produced 1 hits



(CG33275):

Annotation Number : CG7520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035802
Gbrowse : chr3L:7586205-7597077 (+) // 100.0 //
Probeset : 1628945_at
Accessions : protein= NP_996015; /// NP_996016; /// NP_996017;, nucleotide= NM_206293; /// NM_206294; /// NM_206295;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005089 //
FlyMine data for FBgn0035802.
TRiP has 1 RNAi stocks for FBgn0035802 available for purchase.
VDRC has 6 RNAi stocks for FBgn0035802 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.40None
Head0 ± 00 of 4 0.30None
Eye0 ± 00 of 4 0.38None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland2 ± 00 of 4 1.18None
Crop0 ± 00 of 4 0.40None
Midgut1 ± 00 of 4 0.70None
Tubule1 ± 00 of 4 0.80None
Hindgut1 ± 00 of 4 0.50None
Heart0 ± 00 of 4 0.45None
Fat body0 ± 00 of 4 0.44None
Ovary0 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.40None
Male accessory glands1 ± 00 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.57None
Mated spermatheca0 ± 00 of 4 0.35None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS0 ± 00 of 4 0.25None
Larval Salivary gland1 ± 00 of 4 0.51None
Larval midgut1 ± 00 of 4 0.71None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut0 ± 00 of 4 0.44None
Larval fat body1 ± 00 of 4 0.70None
Larval trachea0 ± 00 of 4 0.29None
Larval carcass1 ± 00 of 4 0.61None
S2 cells (growing)0 ± 00 of 4 0.25None
Whole fly1 ± 10 of 4

Looking for CG7520-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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