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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7526-RA through 18771 annotations produced 1 hits



(CG7526):

Annotation Number : CG7526
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035798
Gbrowse : chr3L:7557434-7562594 (+) // 100.0 //
Probeset : 1624389_at
Accessions : protein= NP_001137905; /// NP_648137; /// NP_996014;, nucleotide= NM_001144433; /// NM_139880; /// NM_206292;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0035798.
BDGP gene expression has embryonic in situ data for CG7526: 23 pix of staining in 5 body parts.
Homophila reports that CG7526 is a close match (5e-12) to human gene ADMCKD2;FJHN;HNFJ;MCKD2;UMOD (NP_003352), a gene associated with Glomerulocystic kidney disease with hyperuricemia and isosthenuria, 609886 (3);Hyperuricemic nephropathy, familial juvenile, 162000 (3);Medullary cystic kidney disease 2, 603860 (3).
TRiP has 2 RNAi stocks for FBgn0035798 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035798 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.10Down
Head5 11 of 4 0.10Down
Eye5 11 of 4 0.10Down
Thoracicoabdominal ganglion6 10 of 4 0.10Down
Salivary gland20 31 of 4 0.41Down
Crop17 12 of 4 0.40Down
Midgut17 12 of 4 0.30Down
Tubule4 00 of 4 0.10Down
Hindgut64 44 of 4 1.30Up
Heart3 10 of 4 0.06Down
Fat body14 32 of 4 0.28Down
Ovary3 10 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands15 62 of 4 0.30Down
Virgin spermatheca80 54 of 4 1.59Up
Mated spermatheca149 124 of 4 2.95Up
Adult carcass49 34 of 4 1.00None
Larval CNS4 10 of 4 0.10Down
Larval Salivary gland9 10 of 4 0.18Down
Larval midgut10 00 of 4 0.20Down
Larval tubule6 00 of 4 0.10Down
Larval hindgut169 134 of 4 3.33Up
Larval fat body9 10 of 4 0.20Down
Larval trachea37 194 of 4 0.74None
Larval carcass773 1154 of 415.24Up
S2 cells (growing)5 00 of 4 0.12Down
Whole fly50 24 of 4

Looking for CG7526-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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