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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7530-RA through 18771 annotations produced 1 hits



(CG7530):

Annotation Number : CG7530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038256
Gbrowse : chr3R:10550471-10557231 (-) // 100.0 //
Probeset : 1628081_s_at
Accessions : protein= NP_650387; /// NP_731939; /// NP_731940;, nucleotide= NM_142130; /// NM_169599; /// NM_169600;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0038256.
TRiP has 1 RNAi stocks for FBgn0038256 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038256 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 54 of 4 0.60Down
Head505 354 of 4 1.10None
Eye334 344 of 4 0.70Down
Thoracicoabdominal ganglion336 94 of 4 0.70Down
Salivary gland86 24 of 4 0.18Down
Crop1768 554 of 4 3.70Up
Midgut82 24 of 4 0.20Down
Tubule341 234 of 4 0.70Down
Hindgut459 284 of 4 1.00None
Heart993 304 of 4 2.09Up
Fat body1108 334 of 4 2.33Up
Ovary708 204 of 4 1.50Up
Testis103 74 of 4 0.20Down
Male accessory glands56 54 of 4 0.10Down
Virgin spermatheca887 464 of 4 1.87Up
Mated spermatheca1074 564 of 4 2.26Up
Adult carcass1023 574 of 4 2.20Up
Larval CNS196 124 of 4 0.41Down
Larval Salivary gland158 144 of 4 0.33Down
Larval midgut20 13 of 4 0.04Down
Larval tubule44 34 of 4 0.10Down
Larval hindgut216 344 of 4 0.45Down
Larval fat body127 104 of 4 0.30Down
Larval trachea185 364 of 4 0.39Down
Larval carcass196 244 of 4 0.41Down
S2 cells (growing)303 154 of 4 0.64Down
Whole fly475 144 of 4

Looking for CG7530-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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