FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7536-RB through 18771 annotations produced 1 hits

(CG7536):

Annotation Number : CG7536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030890
Gbrowse : chrX:17973029-17982565 (-) // 100.0 //
Probeset : 1630944_s_at
Accessions : protein= NP_573265; /// NP_728131;, nucleotide= NM_133037; /// NM_167599;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030890.
BDGP gene expression has embryonic in situ data for CG7536: 15 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0030890 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	154 ± 2	4 of 4	0.50	Down
Head	187 ± 8	4 of 4	0.60	Down
Eye	295 ± 5	4 of 4	0.90	None
Thoracicoabdominal ganglion	140 ± 1	4 of 4	0.40	Down
Salivary gland	692 ± 26	4 of 4	2.11	Up
Crop	277 ± 8	4 of 4	0.80	None
Midgut	187 ± 5	4 of 4	0.60	Down
Tubule	1205 ± 51	4 of 4	3.70	Up
Hindgut	609 ± 10	4 of 4	1.90	Up
Heart	295 ± 6	4 of 4	0.90	None
Fat body	383 ± 14	4 of 4	1.17	Up
Ovary	664 ± 10	4 of 4	2.00	Up
Testis	41 ± 1	4 of 4	0.10	Down
Male accessory glands	91 ± 4	4 of 4	0.30	Down
Virgin spermatheca	402 ± 29	4 of 4	1.22	None
Mated spermatheca	378 ± 14	4 of 4	1.15	None
Adult carcass	178 ± 8	4 of 4	0.50	Down
Larval CNS	111 ± 4	4 of 4	0.34	Down
Larval Salivary gland	296 ± 5	4 of 4	0.90	None
Larval midgut	319 ± 10	4 of 4	0.97	None
Larval tubule	1060 ± 37	4 of 4	3.20	Up
Larval hindgut	1367 ± 27	4 of 4	4.17	Up
Larval fat body	122 ± 12	4 of 4	0.40	Down
Larval trachea	319 ± 39	4 of 4	0.97	None
Larval carcass	143 ± 6	4 of 4	0.44	Down
S2 cells (growing)	572 ± 3	4 of 4	1.74	Up
Whole fly	328 ± 18	4 of 4

Looking for CG7536-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720