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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7540-RA through 18771 annotations produced 1 hits



M6 (M6):

Annotation Number : CG7540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037092
Gbrowse : chr3L:21500951-21505047 (+) // 100.0 //
Probeset : 1632967_s_at
Accessions : protein= NP_649323; /// NP_730642;, nucleotide= NM_141066; /// NM_168911;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
FlyMine data for FBgn0037092.
BDGP gene expression has embryonic in situ data for M6: 13 pix of staining in 2 body parts.
Homophila reports that CG7540 is a close match (5e-14) to human gene PLP1;PMD (NP_955772), a gene associated with Pelizaeus-Merzbacher disease, 312080 (3);Spastic paraplegia-2, 312920 (3).
TRiP has 1 RNAi stocks for FBgn0037092 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 ± 24 of 4 1.60Up
Head64 ± 114 of 4 1.20None
Eye30 ± 24 of 4 0.58Down
Thoracicoabdominal ganglion40 ± 54 of 4 0.80None
Salivary gland188 ± 44 of 4 3.64Up
Crop101 ± 74 of 4 2.00Up
Midgut274 ± 144 of 4 5.30Up
Tubule46 ± 64 of 4 0.90None
Hindgut117 ± 34 of 4 2.30Up
Heart17 ± 24 of 4 0.33Down
Fat body29 ± 64 of 4 0.57Down
Ovary25 ± 14 of 4 0.50Down
Testis21 ± 04 of 4 0.40Down
Male accessory glands120 ± 34 of 4 2.30Up
Virgin spermatheca13 ± 13 of 4 0.26Down
Mated spermatheca20 ± 24 of 4 0.39Down
Adult carcass44 ± 44 of 4 0.90None
Larval CNS102 ± 174 of 4 1.98Up
Larval Salivary gland145 ± 74 of 4 2.81Up
Larval midgut126 ± 84 of 4 2.45Up
Larval tubule137 ± 24 of 4 2.70Up
Larval hindgut113 ± 44 of 4 2.20Up
Larval fat body48 ± 74 of 4 0.90None
Larval trachea145 ± 104 of 4 2.82Up
Larval carcass103 ± 164 of 4 1.99None
S2 cells (growing)111 ± 54 of 4 2.16Up
Whole fly51 ± 24 of 4

Looking for CG7540-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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