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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7543-RA through 18771 annotations produced 1 hits



(CG7543):

Annotation Number : CG7543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036164
Gbrowse : chr3L:11471673-11478538 (+) // 100.0 //
Probeset : 1638517_at
Accessions : protein= NP_648469;, nucleotide= NM_140212;
FlyMine data for FBgn0036164.
BioGrid reports that CG7543 interacts with CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.80None
Head7 11 of 4 0.90None
Eye7 10 of 4 0.83None
Thoracicoabdominal ganglion5 20 of 4 0.60None
Salivary gland23 60 of 4 2.64None
Crop15 10 of 4 1.80Up
Midgut11 40 of 4 1.30None
Tubule9 00 of 4 1.10None
Hindgut12 10 of 4 1.50None
Heart10 01 of 4 1.13None
Fat body17 34 of 4 1.96Up
Ovary4 10 of 4 0.50None
Testis5 10 of 4 0.60None
Male accessory glands19 41 of 4 2.20None
Virgin spermatheca10 30 of 4 1.22None
Mated spermatheca14 11 of 4 1.59None
Adult carcass16 30 of 4 1.90None
Larval CNS6 10 of 4 0.71None
Larval Salivary gland7 10 of 4 0.81None
Larval midgut10 20 of 4 1.13None
Larval tubule12 20 of 4 1.40None
Larval hindgut10 10 of 4 1.19None
Larval fat body12 10 of 4 1.40None
Larval trachea7 10 of 4 0.83None
Larval carcass12 00 of 4 1.42None
S2 cells (growing)9 10 of 4 1.05None
Whole fly8 10 of 4

Looking for CG7543-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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