FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7543-RA through 18771 annotations produced 1 hits

(CG7543):

Annotation Number : CG7543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036164
Gbrowse : chr3L:11471673-11478538 (+) // 100.0 //
Probeset : 1638517_at
Accessions : protein= NP_648469;, nucleotide= NM_140212;
FlyMine data for FBgn0036164.
BioGrid reports that CG7543 interacts with CG3978 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	0.80	None
Head	7 ± 1	1 of 4	0.90	None
Eye	7 ± 1	0 of 4	0.83	None
Thoracicoabdominal ganglion	5 ± 2	0 of 4	0.60	None
Salivary gland	23 ± 6	0 of 4	2.64	None
Crop	15 ± 1	0 of 4	1.80	Up
Midgut	11 ± 4	0 of 4	1.30	None
Tubule	9 ± 0	0 of 4	1.10	None
Hindgut	12 ± 1	0 of 4	1.50	None
Heart	10 ± 0	1 of 4	1.13	None
Fat body	17 ± 3	4 of 4	1.96	Up
Ovary	4 ± 1	0 of 4	0.50	None
Testis	5 ± 1	0 of 4	0.60	None
Male accessory glands	19 ± 4	1 of 4	2.20	None
Virgin spermatheca	10 ± 3	0 of 4	1.22	None
Mated spermatheca	14 ± 1	1 of 4	1.59	None
Adult carcass	16 ± 3	0 of 4	1.90	None
Larval CNS	6 ± 1	0 of 4	0.71	None
Larval Salivary gland	7 ± 1	0 of 4	0.81	None
Larval midgut	10 ± 2	0 of 4	1.13	None
Larval tubule	12 ± 2	0 of 4	1.40	None
Larval hindgut	10 ± 1	0 of 4	1.19	None
Larval fat body	12 ± 1	0 of 4	1.40	None
Larval trachea	7 ± 1	0 of 4	0.83	None
Larval carcass	12 ± 0	0 of 4	1.42	None
S2 cells (growing)	9 ± 1	0 of 4	1.05	None
Whole fly	8 ± 1	0 of 4

Looking for CG7543-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720