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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7556-RA through 18771 annotations produced 1 hits



(CG7556):

Annotation Number : CG7556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030990
Gbrowse : chrX:19071029-19073988 (-) // 100.0 //
Probeset : 1626507_at
Accessions : protein= NP_573354;, nucleotide= NM_133126;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from
FlyMine data for FBgn0030990.
BDGP gene expression has embryonic in situ data for CG7556: 9 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0030990 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030990 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 54 of 4 0.70None
Head181 14 of 4 0.80None
Eye101 94 of 4 0.46Down
Thoracicoabdominal ganglion167 74 of 4 0.80None
Salivary gland905 294 of 4 4.07Up
Crop245 64 of 4 1.10None
Midgut306 104 of 4 1.40Up
Tubule206 194 of 4 0.90None
Hindgut274 44 of 4 1.20None
Heart217 204 of 4 0.98None
Fat body195 124 of 4 0.88None
Ovary270 84 of 4 1.20None
Testis80 24 of 4 0.40Down
Male accessory glands1120 164 of 4 5.00Up
Virgin spermatheca288 84 of 4 1.30Up
Mated spermatheca333 94 of 4 1.50Up
Adult carcass207 64 of 4 0.90None
Larval CNS147 94 of 4 0.66Down
Larval Salivary gland1003 484 of 4 4.51Up
Larval midgut254 84 of 4 1.14None
Larval tubule193 44 of 4 0.90None
Larval hindgut236 124 of 4 1.06None
Larval fat body180 124 of 4 0.80None
Larval trachea277 154 of 4 1.25None
Larval carcass261 104 of 4 1.18None
S2 cells (growing)931 374 of 4 4.19Up
Whole fly222 214 of 4

Looking for CG7556-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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