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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7563-RB through 18771 annotations produced 2 hits



Calpain A (CalpA):

Annotation Number : CG7563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012051
Gbrowse : chr2R:15312577-15316555 (+) // 100.0 //
Probeset : 1633524_a_at
Accessions : protein= NP_001097378; /// NP_477047; /// NP_477048;, nucleotide= NM_001103908; /// NM_057699; /// NM_057700;
Pathway : engulfment // inferred from mutant phenotype /// 0009953 // dorsal/ventral pattern formation // inferred from direct as
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct ass
FlyMine data for FBgn0012051.
BDGP gene expression has embryonic in situ data for CalpA: 30 pix of staining in 17 body parts.
Homophila reports that CG7563 is a close match (7e-16) to human gene CANP3;CAPN3 (NP_775111), a gene associated with Muscular dystrophy, limb-girdle, type 2A, 253600 (3).
TRiP has 1 RNAi stocks for FBgn0012051 available for purchase.
VDRC has 3 RNAi stocks for FBgn0012051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain206 34 of 4 2.90Up
Head187 154 of 4 2.60Up
Eye132 54 of 4 1.85Up
Thoracicoabdominal ganglion362 194 of 4 5.10Up
Salivary gland274 134 of 4 3.83Up
Crop220 134 of 4 3.10Up
Midgut74 24 of 4 1.00None
Tubule79 34 of 4 1.10Up
Hindgut174 54 of 4 2.40Up
Heart67 54 of 4 0.94None
Fat body68 124 of 4 0.96None
Ovary40 14 of 4 0.60Down
Testis49 44 of 4 0.70Down
Male accessory glands33 24 of 4 0.50Down
Virgin spermatheca35 14 of 4 0.50Down
Mated spermatheca41 14 of 4 0.58Down
Adult carcass155 94 of 4 2.20Up
Larval CNS108 134 of 4 1.52Up
Larval Salivary gland16 44 of 4 0.22Down
Larval midgut119 24 of 4 1.67Up
Larval tubule90 64 of 4 1.30None
Larval hindgut165 54 of 4 2.31Up
Larval fat body70 34 of 4 1.00None
Larval trachea228 504 of 4 3.19Up
Larval carcass273 124 of 4 3.82Up
S2 cells (growing)350 94 of 4 4.90Up
Whole fly71 44 of 4



Calpain A (CalpA):

Annotation Number : CG7563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012051
Gbrowse : chr2R:15312577-15318068 (+) // 100.0 //
Probeset : 1628628_at
Accessions : protein= NP_001097378; /// NP_477047; /// NP_477048;, nucleotide= NM_001103908; /// NM_057699; /// NM_057700;
Pathway : engulfment // inferred from mutant phenotype /// 0009953 // dorsal/ventral pattern formation // inferred from direct as
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct ass
FlyMine data for FBgn0012051.
BDGP gene expression has embryonic in situ data for CalpA: 30 pix of staining in 17 body parts.
Homophila reports that CG7563 is a close match (7e-16) to human gene CANP3;CAPN3 (NP_775111), a gene associated with Muscular dystrophy, limb-girdle, type 2A, 253600 (3).
TRiP has 1 RNAi stocks for FBgn0012051 available for purchase.
VDRC has 3 RNAi stocks for FBgn0012051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 54 of 4 2.90Up
Head45 34 of 4 1.90Up
Eye35 64 of 4 1.48None
Thoracicoabdominal ganglion106 44 of 4 4.40Up
Salivary gland77 64 of 4 3.21Up
Crop85 44 of 4 3.50Up
Midgut17 14 of 4 0.70Down
Tubule23 04 of 4 0.90Down
Hindgut42 24 of 4 1.70Up
Heart42 44 of 4 1.76Up
Fat body46 74 of 4 1.91Up
Ovary17 14 of 4 0.70Down
Testis17 24 of 4 0.70Down
Male accessory glands18 34 of 4 0.80None
Virgin spermatheca46 34 of 4 1.92Up
Mated spermatheca62 34 of 4 2.60Up
Adult carcass48 54 of 4 2.00Up
Larval CNS72 54 of 4 3.01Up
Larval Salivary gland9 31 of 4 0.37Down
Larval midgut18 04 of 4 0.77Down
Larval tubule22 04 of 4 0.90None
Larval hindgut56 54 of 4 2.34Up
Larval fat body29 24 of 4 1.20None
Larval trachea125 194 of 4 5.19Up
Larval carcass139 64 of 4 5.77Up
S2 cells (growing)146 34 of 4 6.05Up
Whole fly24 14 of 4

Looking for CG7563-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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