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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7564-RA through 18771 annotations produced 1 hits



(CG7564):

Annotation Number : CG7564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036734
Gbrowse : chr3L:17507398-17508979 (+) // 100.0 //
Probeset : 1640929_at
Accessions : protein= NP_648991;, nucleotide= NM_140734;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0036734.
BioGrid reports that CG7564 interacts with CG9098 .
VDRC has 2 RNAi stocks for FBgn0036734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 54 of 4 1.40None
Head19 ± 20 of 4 0.50Down
Eye10 ± 20 of 4 0.26Down
Thoracicoabdominal ganglion24 ± 41 of 4 0.60Down
Salivary gland21 ± 70 of 4 0.53None
Crop22 ± 31 of 4 0.50Down
Midgut16 ± 20 of 4 0.40Down
Tubule23 ± 21 of 4 0.60Down
Hindgut28 ± 22 of 4 0.70Down
Heart8 ± 00 of 4 0.21Down
Fat body13 ± 70 of 4 0.32Down
Ovary79 ± 24 of 4 1.90Up
Testis61 ± 44 of 4 1.50Up
Male accessory glands42 ± 53 of 4 1.00None
Virgin spermatheca16 ± 10 of 4 0.40Down
Mated spermatheca14 ± 30 of 4 0.34Down
Adult carcass21 ± 20 of 4 0.50Down
Larval CNS49 ± 44 of 4 1.21None
Larval Salivary gland37 ± 31 of 4 0.90None
Larval midgut14 ± 20 of 4 0.35Down
Larval tubule26 ± 31 of 4 0.60Down
Larval hindgut22 ± 11 of 4 0.55Down
Larval fat body31 ± 22 of 4 0.80None
Larval trachea20 ± 31 of 4 0.49Down
Larval carcass23 ± 10 of 4 0.58Down
S2 cells (growing)66 ± 44 of 4 1.61Up
Whole fly41 ± 34 of 4

Looking for CG7564-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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