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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7581-RA through 18771 annotations produced 1 hits



Bub3 (Bub3):

Annotation Number : CG7581
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025457
Gbrowse : chr3R:25499854-25501141 (-) // 100.0 //
Probeset : 1637317_at
Accessions : protein= NP_477381;, nucleotide= NM_058033;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 000587
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025457.
BDGP gene expression has embryonic in situ data for Bub3: 22 pix of staining in 13 body parts.
BioGrid reports that CG7581 interacts with CG7838 .
TRiP has 2 RNAi stocks for FBgn0025457 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025457 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 44 of 4 0.60Down
Head129 84 of 4 0.40Down
Eye86 14 of 4 0.24Down
Thoracicoabdominal ganglion133 54 of 4 0.40Down
Salivary gland145 84 of 4 0.41Down
Crop118 64 of 4 0.30Down
Midgut143 104 of 4 0.40Down
Tubule128 84 of 4 0.40Down
Hindgut116 74 of 4 0.30Down
Heart100 64 of 4 0.28Down
Fat body107 34 of 4 0.30Down
Ovary689 44 of 4 1.90Up
Testis138 74 of 4 0.40Down
Male accessory glands138 94 of 4 0.40Down
Virgin spermatheca89 54 of 4 0.25Down
Mated spermatheca101 44 of 4 0.28Down
Adult carcass95 74 of 4 0.30Down
Larval CNS986 614 of 4 2.75Up
Larval Salivary gland399 74 of 4 1.12Up
Larval midgut148 54 of 4 0.42Down
Larval tubule171 34 of 4 0.50Down
Larval hindgut192 54 of 4 0.54Down
Larval fat body204 114 of 4 0.60Down
Larval trachea445 384 of 4 1.24Up
Larval carcass252 104 of 4 0.71Down
S2 cells (growing)900 254 of 4 2.51Up
Whole fly358 104 of 4

Looking for CG7581-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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