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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7583-RA through 18771 annotations produced 1 hits



C-terminal Binding Protein (CtBP):

Annotation Number : CG7583
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020496
Gbrowse : chr3R:8837387-8847461 (+) // 99.75 //
Probeset : 1623106_s_at
Accessions : protein= NP_001014617; /// NP_524336; /// NP_731762; /// NP_731763; /// NP_731764;, nucleotide= NM_001014617; /// NM_079612; /// NM_169490; /// NM_169491; /// NM_169492;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : "0003713 // transcription coactivator activity // inferred from direct assay /// 0003714 // transcription corepressor ac
FlyMine data for FBgn0020496.
Homophila reports that CG7583 is a close match (8e-16) to human gene GLXR;GRHPR (NP_036335), a gene associated with Hyperoxaluria, primary, type II, 260000 (3).
BioGrid reports that CG7583 interacts with CG7952 CG8524 CG9653 CG9242 CG9286 CG9908 CG8384 CG6494 CG6494 CG6494 CG5460 CG3978 CG1849 CG1856 CG1856 CG3936 CG3497 CG8384 CG3956 CG4717 .
TRiP has 2 RNAi stocks for FBgn0020496 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain465 ± 54 of 4 2.20Up
Head186 ± 54 of 4 0.90None
Eye345 ± 154 of 4 1.66Up
Thoracicoabdominal ganglion406 ± 84 of 4 2.00Up
Salivary gland140 ± 303 of 4 0.68None
Crop278 ± 34 of 4 1.30Up
Midgut168 ± 84 of 4 0.80Down
Tubule104 ± 44 of 4 0.50Down
Hindgut196 ± 74 of 4 0.90None
Heart353 ± 134 of 4 1.70Up
Fat body161 ± 94 of 4 0.77Down
Ovary335 ± 44 of 4 1.60Up
Testis58 ± 24 of 4 0.30Down
Male accessory glands237 ± 134 of 4 1.10None
Virgin spermatheca111 ± 144 of 4 0.54Down
Mated spermatheca112 ± 34 of 4 0.54Down
Adult carcass198 ± 224 of 4 1.00None
Larval CNS614 ± 534 of 4 2.95Up
Larval Salivary gland245 ± 74 of 4 1.18Up
Larval midgut200 ± 84 of 4 0.96None
Larval tubule273 ± 114 of 4 1.30Up
Larval hindgut202 ± 44 of 4 0.97None
Larval fat body193 ± 144 of 4 0.90None
Larval trachea421 ± 304 of 4 2.03Up
Larval carcass202 ± 44 of 4 0.97None
S2 cells (growing)538 ± 134 of 4 2.59Up
Whole fly208 ± 64 of 4

Looking for CG7583-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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