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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7587-RA through 18771 annotations produced 1 hits



(CG7587):

Annotation Number : CG7587
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038523
Gbrowse : chr3R:13420144-13420695 (+) // 100.0 //
Probeset : 1639249_at
Accessions : protein= NP_732246;, nucleotide= NM_169764;
FlyMine data for FBgn0038523.
VDRC has 3 RNAi stocks for FBgn0038523 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head2 ± 10 of 4 0.70None
Eye3 ± 10 of 4 1.04None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland2 ± 00 of 4 0.53None
Crop2 ± 10 of 4 0.70None
Midgut1 ± 00 of 4 0.40None
Tubule1 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.40None
Heart3 ± 10 of 4 0.86None
Fat body1 ± 00 of 4 0.52None
Ovary1 ± 00 of 4 0.30None
Testis18 ± 43 of 4 5.00Up
Male accessory glands2 ± 00 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.32None
Mated spermatheca1 ± 00 of 4 0.32None
Adult carcass4 ± 20 of 4 1.10None
Larval CNS2 ± 10 of 4 0.55None
Larval Salivary gland8619 ± 5064 of 42329.46Up
Larval midgut3 ± 20 of 4 0.80None
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut1 ± 00 of 4 0.46None
Larval fat body285 ± 1224 of 477.10None
Larval trachea3 ± 40 of 4 0.86None
Larval carcass1 ± 00 of 4 0.34None
S2 cells (growing)1 ± 00 of 4 0.37None
Whole fly3 ± 10 of 4

Looking for CG7587-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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