FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7590-RA through 18771 annotations produced 1 hits

scylla (scyl):

Annotation Number : CG7590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041094
Gbrowse : chr3L:11245408-11248621 (+) // 100.0 //
Probeset : 1627101_at
Accessions : protein= NP_648456; /// NP_996043;, nucleotide= NM_140199; /// NM_206321;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
FlyMine data for FBgn0041094.
BioGrid reports that CG7590 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0041094 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	442 ± 17	4 of 4	1.40	Up
Head	321 ± 31	4 of 4	1.00	None
Eye	371 ± 9	4 of 4	1.18	Up
Thoracicoabdominal ganglion	427 ± 53	4 of 4	1.40	None
Salivary gland	118 ± 14	4 of 4	0.38	Down
Crop	720 ± 44	4 of 4	2.30	Up
Midgut	476 ± 20	4 of 4	1.50	Up
Tubule	127 ± 29	4 of 4	0.40	Down
Hindgut	647 ± 24	4 of 4	2.10	Up
Heart	1244 ± 79	4 of 4	3.96	Up
Fat body	326 ± 81	4 of 4	1.04	None
Ovary	367 ± 18	4 of 4	1.20	None
Testis	104 ± 8	4 of 4	0.30	Down
Male accessory glands	948 ± 35	4 of 4	3.00	Up
Virgin spermatheca	53 ± 8	4 of 4	0.17	Down
Mated spermatheca	60 ± 5	4 of 4	0.19	Down
Adult carcass	373 ± 66	4 of 4	1.20	None
Larval CNS	508 ± 39	4 of 4	1.62	Up
Larval Salivary gland	275 ± 19	4 of 4	0.88	None
Larval midgut	270 ± 14	4 of 4	0.86	Down
Larval tubule	1147 ± 71	4 of 4	3.70	Up
Larval hindgut	567 ± 75	4 of 4	1.81	Up
Larval fat body	58 ± 5	4 of 4	0.20	Down
Larval trachea	1183 ± 140	4 of 4	3.77	Up
Larval carcass	185 ± 33	4 of 4	0.59	Down
S2 cells (growing)	111 ± 10	4 of 4	0.36	Down
Whole fly	314 ± 8	4 of 4

Looking for CG7590-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720