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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7595-RA through 18771 annotations produced 1 hits



Crinkled (ck):

Annotation Number : CG7595
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000317
Gbrowse : chr2L:15044960-15057848 (-) // 100.0 //
Probeset : 1626841_s_at
Accessions : protein= NP_523571; /// NP_723895;, nucleotide= NM_078847; /// NM_165099;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0000317.
Homophila reports that CG7595 is a close match (5e-120) to human gene CELIAC4;MYO9B;MYR5 (NP_004136), a gene associated with {Celiac disease, susceptibility to, 4}, 609753 (3).
BioGrid reports that CG7595 interacts with CG2248 CG18361 CG17697 CG3595 .
TRiP has 1 RNAi stocks for FBgn0000317 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000317 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 24 of 4 0.20Down
Head127 64 of 4 0.90None
Eye128 54 of 4 0.93None
Thoracicoabdominal ganglion39 14 of 4 0.30Down
Salivary gland167 134 of 4 1.21None
Crop184 54 of 4 1.30Up
Midgut113 34 of 4 0.80None
Tubule474 244 of 4 3.40Up
Hindgut218 84 of 4 1.60Up
Heart103 54 of 4 0.75Down
Fat body191 194 of 4 1.38Up
Ovary397 64 of 4 2.90Up
Testis31 14 of 4 0.20Down
Male accessory glands202 114 of 4 1.50Up
Virgin spermatheca173 114 of 4 1.25None
Mated spermatheca186 104 of 4 1.35Up
Adult carcass105 94 of 4 0.80None
Larval CNS68 34 of 4 0.49Down
Larval Salivary gland159 104 of 4 1.15None
Larval midgut207 144 of 4 1.50Up
Larval tubule182 64 of 4 1.30Up
Larval hindgut400 74 of 4 2.90Up
Larval fat body58 54 of 4 0.40Down
Larval trachea142 204 of 4 1.03None
Larval carcass145 44 of 4 1.05None
S2 cells (growing)57 14 of 4 0.41Down
Whole fly138 114 of 4

Looking for CG7595-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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