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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7599-RA through 18771 annotations produced 1 hits

Gene V (Eig71Ef):

Annotation Number : CG7599
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004593
Gbrowse : chr3L:15649754-15650501 (-) // 100.0 //
Probeset : 1635719_at
Accessions : protein= NP_524093;, nucleotide= NM_079369;
FlyMine data for FBgn0004593.
VDRC has 1 RNAi stocks for FBgn0004593 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.60None
Head1 10 of 4 1.70None
Eye0 00 of 4 0.92None
Thoracicoabdominal ganglion0 00 of 4 0.70None
Salivary gland1 00 of 4 1.22None
Crop2 00 of 4 2.10None
Midgut2 10 of 4 3.00None
Tubule3 00 of 4 3.20Up
Hindgut0 00 of 4 0.80None
Heart2 10 of 4 2.19None
Fat body0 00 of 4 1.00None
Ovary0 00 of 4 0.60None
Testis0 00 of 4 0.90None
Male accessory glands1 00 of 4 1.10None
Virgin spermatheca0 00 of 4 0.97None
Mated spermatheca0 00 of 4 0.81None
Adult carcass1 00 of 4 1.30None
Larval CNS0 00 of 4 0.76None
Larval Salivary gland2 00 of 4 2.14None
Larval midgut2 00 of 4 2.38Up
Larval tubule1 00 of 4 1.20None
Larval hindgut1 00 of 4 1.08None
Larval fat body17 161 of 419.20None
Larval trachea0 00 of 4 0.70None
Larval carcass0 00 of 4 0.76None
S2 cells (growing)1 00 of 4 1.11None
Whole fly0 00 of 4

Looking for CG7599-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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