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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7607-RA through 18771 annotations produced 1 hits


Annotation Number : CG7607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036145
Gbrowse : chr3L:11192717-11193688 (+) // 100.0 //
Probeset : 1626684_at
Accessions : protein= NP_648449;, nucleotide= NM_140192;
FlyMine data for FBgn0036145.
VDRC has 1 RNAi stocks for FBgn0036145 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2224 524 of 450.50Up
Head1001 484 of 422.70Up
Eye266 104 of 4 6.05Up
Thoracicoabdominal ganglion2379 374 of 454.00Up
Salivary gland124 174 of 4 2.82Up
Crop8 12 of 4 0.20Down
Midgut6 10 of 4 0.20Down
Tubule3 10 of 4 0.10Down
Hindgut8 21 of 4 0.20Down
Heart23 24 of 4 0.53Down
Fat body8 30 of 4 0.19Down
Ovary6 02 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands18 13 of 4 0.40Down
Virgin spermatheca11 22 of 4 0.26Down
Mated spermatheca11 12 of 4 0.27Down
Adult carcass26 34 of 4 0.60Down
Larval CNS736 804 of 416.71Up
Larval Salivary gland25 64 of 4 0.57None
Larval midgut6 20 of 4 0.15Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut7 11 of 4 0.18Down
Larval fat body16 31 of 4 0.40Down
Larval trachea15 44 of 4 0.34Down
Larval carcass16 34 of 4 0.38Down
S2 cells (growing)142 24 of 4 3.24Up
Whole fly44 54 of 4

Looking for CG7607-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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