FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7609-RA through 18771 annotations produced 1 hits

(CG7609):

Annotation Number : CG7609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027518
Gbrowse : chr3R:25567687-25570790 (-) // 100.0 //
Probeset : 1640643_a_at
Accessions : protein= NP_651720; /// NP_733303;, nucleotide= NM_143463; /// NM_170424;
Interpro : 0005053 // peroxisome matrix targeting signal-2 binding // inferred from sequence or structural similarity
FlyMine data for FBgn0027518.
Homophila reports that CG7609 is a close match (4e-22) to human gene PEX7;RCDP1 (NP_000279), a gene associated with Refsum disease, 266500 (3);Rhizomelic chondrodysplasia punctata, type 1, 215100 (3).
VDRC has 2 RNAi stocks for FBgn0027518 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	55 ± 2	4 of 4	0.70	Down
Head	37 ± 2	4 of 4	0.50	Down
Eye	28 ± 1	4 of 4	0.36	Down
Thoracicoabdominal ganglion	55 ± 4	4 of 4	0.70	Down
Salivary gland	78 ± 8	3 of 4	1.00	None
Crop	44 ± 2	4 of 4	0.60	Down
Midgut	49 ± 4	4 of 4	0.60	Down
Tubule	68 ± 3	4 of 4	0.90	Down
Hindgut	40 ± 1	4 of 4	0.50	Down
Heart	41 ± 2	4 of 4	0.53	Down
Fat body	60 ± 7	4 of 4	0.77	None
Ovary	129 ± 1	4 of 4	1.60	Up
Testis	25 ± 1	4 of 4	0.30	Down
Male accessory glands	51 ± 6	4 of 4	0.70	Down
Virgin spermatheca	57 ± 6	4 of 4	0.73	None
Mated spermatheca	55 ± 7	4 of 4	0.71	None
Adult carcass	58 ± 8	3 of 4	0.70	None
Larval CNS	70 ± 11	4 of 4	0.90	None
Larval Salivary gland	63 ± 5	4 of 4	0.80	None
Larval midgut	58 ± 5	4 of 4	0.75	None
Larval tubule	68 ± 3	4 of 4	0.90	None
Larval hindgut	47 ± 2	4 of 4	0.60	Down
Larval fat body	56 ± 7	4 of 4	0.70	None
Larval trachea	55 ± 6	4 of 4	0.70	Down
Larval carcass	60 ± 3	4 of 4	0.78	None
S2 cells (growing)	253 ± 9	4 of 4	3.23	Up
Whole fly	78 ± 6	4 of 4

Looking for CG7609-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720