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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7616-RA through 18771 annotations produced 1 hits



(CG7616):

Annotation Number : CG7616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036142
Gbrowse : chr3L:11162897-11165271 (+) // 100.0 //
Probeset : 1640485_at
Accessions : protein= NP_648446;, nucleotide= NM_140189;
Interpro : 0004672 // protein kinase activity // non-traceable author statement
FlyMine data for FBgn0036142.
Homophila reports that CG7616 is a close match (3e-11) to human gene ADCK3;ARCA2;CABC1;COQ8;SCAR9 (NP_064632), a gene associated with Coenzyme Q10 deficiency, 607426 (3);Spinocerebellar ataxia, autosomal recessive 9, 612016 (3).
TRiP has 1 RNAi stocks for FBgn0036142 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036142 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 14 of 4 0.30Down
Head48 ± 44 of 4 0.50Down
Eye33 ± 24 of 4 0.33Down
Thoracicoabdominal ganglion39 ± 14 of 4 0.40Down
Salivary gland152 ± 64 of 4 1.51Up
Crop349 ± 94 of 4 3.40Up
Midgut89 ± 34 of 4 0.90None
Tubule57 ± 34 of 4 0.60Down
Hindgut200 ± 84 of 4 2.00Up
Heart101 ± 54 of 4 1.00None
Fat body122 ± 104 of 4 1.20None
Ovary93 ± 44 of 4 0.90None
Testis645 ± 114 of 4 6.40Up
Male accessory glands66 ± 44 of 4 0.70Down
Virgin spermatheca77 ± 44 of 4 0.77Down
Mated spermatheca77 ± 14 of 4 0.76Down
Adult carcass155 ± 134 of 4 1.50Up
Larval CNS25 ± 24 of 4 0.26Down
Larval Salivary gland36 ± 44 of 4 0.36Down
Larval midgut61 ± 54 of 4 0.60Down
Larval tubule43 ± 04 of 4 0.40Down
Larval hindgut45 ± 14 of 4 0.45Down
Larval fat body80 ± 314 of 4 0.80None
Larval trachea20 ± 44 of 4 0.20Down
Larval carcass29 ± 14 of 4 0.29Down
S2 cells (growing)24 ± 24 of 4 0.24Down
Whole fly101 ± 64 of 4

Looking for CG7616-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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