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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7622-RA through 18771 annotations produced 1 hits



Viability (RpL36):

Annotation Number : CG7622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002579
Gbrowse : chrX:522349-523495 (-) // 100.0 //
Probeset : 1624019_s_at
Accessions : protein= NP_476629; /// NP_726686; /// NP_726687; /// NP_726688;, nucleotide= NM_057281; /// NM_166853; /// NM_166854; /// NM_166855;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0002579.
BioGrid reports that CG7622 interacts with CG9415 CG1849 .
VDRC has 2 RNAi stocks for FBgn0002579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3195 ± 854 of 4 1.00None
Head4047 ± 2234 of 4 1.20Up
Eye5616 ± 314 of 4 1.67Up
Thoracicoabdominal ganglion4248 ± 1404 of 4 1.30Up
Salivary gland9289 ± 2064 of 4 2.76Up
Crop4750 ± 2064 of 4 1.40Up
Midgut4477 ± 804 of 4 1.30Up
Tubule3540 ± 594 of 4 1.10Up
Hindgut4627 ± 1324 of 4 1.40Up
Heart5554 ± 3814 of 4 1.65Up
Fat body4840 ± 5394 of 4 1.44Up
Ovary2740 ± 274 of 4 0.80Down
Testis889 ± 224 of 4 0.30Down
Male accessory glands6834 ± 3504 of 4 2.00Up
Virgin spermatheca3821 ± 1304 of 4 1.14Up
Mated spermatheca4029 ± 684 of 4 1.20Up
Adult carcass4737 ± 1684 of 4 1.40Up
Larval CNS2476 ± 1954 of 4 0.74Down
Larval Salivary gland6454 ± 2514 of 4 1.92Up
Larval midgut3920 ± 794 of 4 1.17Up
Larval tubule3724 ± 384 of 4 1.10None
Larval hindgut3472 ± 334 of 4 1.03None
Larval fat body6137 ± 7084 of 4 1.80Up
Larval trachea5659 ± 2004 of 4 1.68Up
Larval carcass4073 ± 2494 of 4 1.21None
S2 cells (growing)4183 ± 904 of 4 1.24Up
Whole fly3360 ± 1234 of 4

Looking for CG7622-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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