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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7626-RA through 18771 annotations produced 1 hits



Spt5 (Spt5):

Annotation Number : CG7626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040273
Gbrowse : chr2R:15324988-15329404 (+) // 100.0 //
Probeset : 1626448_at
Accessions : protein= NP_652610;, nucleotide= NM_144353;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0005634 // nucleus // non-traceable
Interpro : 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0003711 // transcripti
FlyMine data for FBgn0040273.
BDGP gene expression has embryonic in situ data for Spt5: 4 pix of staining in 1 body parts.
BioGrid reports that CG7626 interacts with CG8159 .
TRiP has 1 RNAi stocks for FBgn0040273 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040273 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 134 of 4 1.60Up
Head150 44 of 4 0.90None
Eye149 84 of 4 0.91None
Thoracicoabdominal ganglion244 104 of 4 1.50Up
Salivary gland251 44 of 4 1.54Up
Crop141 24 of 4 0.90None
Midgut122 44 of 4 0.70Down
Tubule141 54 of 4 0.90Down
Hindgut144 44 of 4 0.90None
Heart92 44 of 4 0.56Down
Fat body95 34 of 4 0.58Down
Ovary269 44 of 4 1.60Up
Testis76 34 of 4 0.50Down
Male accessory glands278 114 of 4 1.70Up
Virgin spermatheca88 34 of 4 0.54Down
Mated spermatheca105 24 of 4 0.64Down
Adult carcass144 74 of 4 0.90None
Larval CNS273 84 of 4 1.67Up
Larval Salivary gland428 274 of 4 2.61Up
Larval midgut148 54 of 4 0.91None
Larval tubule153 54 of 4 0.90None
Larval hindgut149 44 of 4 0.91None
Larval fat body127 104 of 4 0.80Down
Larval trachea160 164 of 4 0.98None
Larval carcass160 64 of 4 0.98None
S2 cells (growing)245 64 of 4 1.50Up
Whole fly164 104 of 4

Looking for CG7626-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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