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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7637-RA through 18771 annotations produced 1 hits



(CG7637):

Annotation Number : CG7637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033548
Gbrowse : chr2R:6698060-6698395 (-) // 98.54 //
Probeset : 1623194_at
Accessions : protein= NP_610610;, nucleotide= NM_136766;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
FlyMine data for FBgn0033548.
Homophila reports that CG7637 is a close match (2e-16) to human gene NOLA3;NOP10 (NP_061118), a gene associated with Dyskeratosis congenita, autosomal recessive, 224230 (3).
VDRC has 5 RNAi stocks for FBgn0033548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 ± 54 of 4 0.20Down
Head231 ± 94 of 4 0.40Down
Eye137 ± 104 of 4 0.25Down
Thoracicoabdominal ganglion193 ± 74 of 4 0.40Down
Salivary gland181 ± 264 of 4 0.33Down
Crop248 ± 164 of 4 0.50Down
Midgut295 ± 234 of 4 0.50None
Tubule195 ± 364 of 4 0.40Down
Hindgut155 ± 84 of 4 0.30Down
Heart292 ± 314 of 4 0.54Down
Fat body343 ± 794 of 4 0.63None
Ovary828 ± 544 of 4 1.50Up
Testis77 ± 24 of 4 0.10Down
Male accessory glands664 ± 324 of 4 1.20None
Virgin spermatheca267 ± 274 of 4 0.49Down
Mated spermatheca465 ± 404 of 4 0.85None
Adult carcass237 ± 74 of 4 0.40Down
Larval CNS774 ± 604 of 4 1.42None
Larval Salivary gland567 ± 1074 of 4 1.04None
Larval midgut180 ± 264 of 4 0.33Down
Larval tubule106 ± 24 of 4 0.20Down
Larval hindgut228 ± 364 of 4 0.42Down
Larval fat body106 ± 64 of 4 0.20Down
Larval trachea1052 ± 1894 of 4 1.93Up
Larval carcass419 ± 1264 of 4 0.77None
S2 cells (growing)577 ± 54 of 4 1.06None
Whole fly545 ± 824 of 4

Looking for CG7637-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime