FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7643-RA through 18771 annotations produced 1 hits

monopolar spindles 1 (ald):

Annotation Number : CG7643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000063
Gbrowse : chr3R:13497019-13499550 (+) // 100.0 //
Probeset : 1637781_at
Accessions : protein= NP_650644;, nucleotide= NM_142387;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0000063.
Homophila reports that CG7643 is a close match (4e-11) to human gene DM;DMK;DMPK (NP_001075031), a gene associated with Myotonic dystrophy, 160900 (3).
BioGrid reports that CG7643 interacts with CG10078 CG5825 CG11182 CG17515 CG11138 CG13806 CG18745 CG31811 CG16892 CG31646 CG32169 CG13510 CG13625 CG9046 CG31211 CG5442 CG31204 CG5708 CG6191 CG6987 CG2944 CG5473 CG31000 CG7948 CG5731 CG15218 CG12723 CG4602 CG8929 CG2189 CG8841 CG6369 CG9776 CG33109 CG11352 CG9889 CG5386 CG15112 CG14816 CG8541 .
TRiP has 2 RNAi stocks for FBgn0000063 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000063 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 0	4 of 4	0.30	Down
Head	5 ± 1	0 of 4	0.10	Down
Eye	4 ± 0	0 of 4	0.11	Down
Thoracicoabdominal ganglion	11 ± 1	2 of 4	0.30	Down
Salivary gland	1 ± 0	0 of 4	0.04	Down
Crop	2 ± 0	0 of 4	0.10	Down
Midgut	2 ± 0	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	3 ± 1	0 of 4	0.10	Down
Heart	3 ± 1	0 of 4	0.08	Down
Fat body	3 ± 2	0 of 4	0.09	Down
Ovary	112 ± 2	4 of 4	2.90	Up
Testis	45 ± 3	4 of 4	1.20	None
Male accessory glands	0 ± 0	0 of 4	0.00	Down
Virgin spermatheca	4 ± 0	0 of 4	0.10	Down
Mated spermatheca	3 ± 0	0 of 4	0.08	Down
Adult carcass	6 ± 0	0 of 4	0.20	Down
Larval CNS	51 ± 2	4 of 4	1.32	Up
Larval Salivary gland	3 ± 1	0 of 4	0.09	Down
Larval midgut	1 ± 0	0 of 4	0.05	Down
Larval tubule	3 ± 1	0 of 4	0.10	Down
Larval hindgut	3 ± 1	0 of 4	0.09	Down
Larval fat body	10 ± 3	1 of 4	0.30	Down
Larval trachea	12 ± 3	3 of 4	0.31	Down
Larval carcass	6 ± 1	0 of 4	0.16	Down
S2 cells (growing)	59 ± 1	4 of 4	1.52	Up
Whole fly	39 ± 2	4 of 4

Looking for CG7643-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720