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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7644-RA through 18771 annotations produced 1 hits

beaten path Ib (beat-Ib):

Annotation Number : CG7644
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028645
Gbrowse : chr2L:15905132-15962432 (-) // 100.0 //
Probeset : 1630004_at
Accessions : protein= NP_001162987; /// NP_523579;, nucleotide= NM_001169516; /// NM_078855;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0028645.
BDGP gene expression has embryonic in situ data for beat-Ib: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0028645 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain567 124 of 433.70Up
Head114 104 of 4 6.80Up
Eye12 23 of 4 0.71None
Thoracicoabdominal ganglion443 54 of 426.30Up
Salivary gland7 40 of 4 0.42None
Crop2 10 of 4 0.10Down
Midgut3 00 of 4 0.20Down
Tubule4 00 of 4 0.30Down
Hindgut1 10 of 4 0.10Down
Heart4 10 of 4 0.25Down
Fat body4 10 of 4 0.25Down
Ovary9 13 of 4 0.60Down
Testis2 10 of 4 0.10Down
Male accessory glands12 31 of 4 0.80None
Virgin spermatheca8 10 of 4 0.53Down
Mated spermatheca5 20 of 4 0.31Down
Adult carcass1 00 of 4 0.10Down
Larval CNS168 154 of 4 9.99Up
Larval Salivary gland2 10 of 4 0.15Down
Larval midgut5 10 of 4 0.34Down
Larval tubule5 10 of 4 0.30Down
Larval hindgut2 10 of 4 0.12Down
Larval fat body4 20 of 4 0.30Down
Larval trachea2 20 of 4 0.16Down
Larval carcass0 00 of 4 0.05Down
S2 cells (growing)1 10 of 4 0.11Down
Whole fly16 14 of 4

Looking for CG7644-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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