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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7646-RB through 18771 annotations produced 1 hits



(CG7646):

Annotation Number : CG7646
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036926
Gbrowse : chr3L:19985015-19989012 (+) // 100.0 //
Probeset : 1627218_a_at
Accessions : protein= NP_649167; /// NP_788542;, nucleotide= NM_140910; /// NM_176364;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0036926.
BDGP gene expression has embryonic in situ data for CG7646: 4 pix of staining in 1 body parts.
Homophila reports that CG7646 is a close match (3e-28) to human gene GCAP;GUCA1A (NP_000400), a gene associated with Cone dystrophy-3, 602093 (3).
VDRC has 3 RNAi stocks for FBgn0036926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1251 234 of 418.20Up
Head480 364 of 4 7.00Up
Eye180 84 of 4 2.63Up
Thoracicoabdominal ganglion974 254 of 414.20Up
Salivary gland20 03 of 4 0.30Down
Crop115 34 of 4 1.70Up
Midgut18 14 of 4 0.30Down
Tubule21 04 of 4 0.30Down
Hindgut52 04 of 4 0.80None
Heart91 84 of 4 1.34None
Fat body26 44 of 4 0.38Down
Ovary27 04 of 4 0.40Down
Testis11 04 of 4 0.20Down
Male accessory glands24 04 of 4 0.40Down
Virgin spermatheca36 24 of 4 0.53Down
Mated spermatheca45 14 of 4 0.67None
Adult carcass55 44 of 4 0.80None
Larval CNS995 1034 of 414.50Up
Larval Salivary gland30 14 of 4 0.44Down
Larval midgut29 04 of 4 0.43Down
Larval tubule20 14 of 4 0.30Down
Larval hindgut59 04 of 4 0.86None
Larval fat body24 24 of 4 0.30Down
Larval trachea62 74 of 4 0.91None
Larval carcass89 74 of 4 1.30None
S2 cells (growing)33 14 of 4 0.49Down
Whole fly68 74 of 4

Looking for CG7646-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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