FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7656-RA through 18771 annotations produced 1 hits

(CG7656):

Annotation Number : CG7656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036516
Gbrowse : chr3L:15578898-15581266 (-) // 100.0 //
Probeset : 1634652_a_at
Accessions : protein= NP_648783; /// NP_730058; /// NP_730059;, nucleotide= NM_140526; /// NM_168627; /// NM_168628;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0016874 // ligase ac
FlyMine data for FBgn0036516.
Homophila reports that CG7656 is a close match (9e-15) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG7656 interacts with CG8368 CG9511 .
VDRC has 3 RNAi stocks for FBgn0036516 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	137 ± 3	4 of 4	1.40	Up
Head	100 ± 7	4 of 4	1.10	None
Eye	212 ± 9	4 of 4	2.22	Up
Thoracicoabdominal ganglion	112 ± 8	4 of 4	1.20	None
Salivary gland	112 ± 5	4 of 4	1.18	None
Crop	142 ± 4	4 of 4	1.50	Up
Midgut	58 ± 5	4 of 4	0.60	Down
Tubule	112 ± 2	4 of 4	1.20	Up
Hindgut	90 ± 4	4 of 4	0.90	None
Heart	107 ± 2	4 of 4	1.12	None
Fat body	87 ± 14	4 of 4	0.92	None
Ovary	128 ± 4	4 of 4	1.30	Up
Testis	53 ± 3	4 of 4	0.60	Down
Male accessory glands	79 ± 3	4 of 4	0.80	None
Virgin spermatheca	114 ± 4	4 of 4	1.19	Up
Mated spermatheca	104 ± 6	4 of 4	1.09	None
Adult carcass	77 ± 1	4 of 4	0.80	Down
Larval CNS	205 ± 13	4 of 4	2.15	Up
Larval Salivary gland	239 ± 9	4 of 4	2.50	Up
Larval midgut	95 ± 6	4 of 4	1.00	None
Larval tubule	310 ± 5	4 of 4	3.20	Up
Larval hindgut	133 ± 10	4 of 4	1.40	Up
Larval fat body	138 ± 4	4 of 4	1.40	Up
Larval trachea	192 ± 12	4 of 4	2.01	Up
Larval carcass	210 ± 29	4 of 4	2.20	Up
S2 cells (growing)	129 ± 3	4 of 4	1.36	Up
Whole fly	95 ± 5	4 of 4

Looking for CG7656-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720