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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7658-RA through 18771 annotations produced 1 hits

CG7658 (Cpr78Cc):

Annotation Number : CG7658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037069
Gbrowse : chr3L:21293687-21294273 (+) // 100.0 //
Probeset : 1641136_at
Accessions : protein= NP_649300;, nucleotide= NM_141043;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0037069.
BDGP gene expression has embryonic in situ data for CG7658: 4 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0037069 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30None
Head7 10 of 4 0.60None
Eye4 00 of 4 0.40None
Thoracicoabdominal ganglion4 10 of 4 0.40None
Salivary gland5 20 of 4 0.49None
Crop1 00 of 4 0.10None
Midgut3 10 of 4 0.30None
Tubule6 00 of 4 0.60Down
Hindgut7 00 of 4 0.60None
Heart2 00 of 4 0.20None
Fat body4 40 of 4 0.41None
Ovary1 00 of 4 0.10None
Testis23 04 of 4 2.00None
Male accessory glands4 10 of 4 0.40None
Virgin spermatheca7 10 of 4 0.60None
Mated spermatheca5 20 of 4 0.46None
Adult carcass10 30 of 4 0.90None
Larval CNS2 00 of 4 0.24None
Larval Salivary gland4 20 of 4 0.34None
Larval midgut10 10 of 4 0.85None
Larval tubule3 10 of 4 0.30None
Larval hindgut9 20 of 4 0.78None
Larval fat body6 20 of 4 0.50None
Larval trachea32 222 of 4 2.80None
Larval carcass1101 2294 of 493.97Up
S2 cells (growing)2 10 of 4 0.19None
Whole fly11 51 of 4

Looking for CG7658-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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