FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7659-RA through 18771 annotations produced 1 hits

biparous (tap):

Annotation Number : CG7659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015550
Gbrowse : chr3L:17352749-17354917 (+) // 99.82 //
Probeset : 1635026_at
Accessions : protein= NP_524124;, nucleotide= NM_079400;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription fa
FlyMine data for FBgn0015550.
BDGP gene expression has embryonic in situ data for tap: 42 pix of staining in 12 body parts.
Homophila reports that CG7659 is a close match (3e-12) to human gene NEUROD1;NIDDM (NP_002491), a gene associated with {Diabetes mellitus, noninsulin-dependent}, 125853 (3).
TRiP has 2 RNAi stocks for FBgn0015550 available for purchase.
VDRC has 5 RNAi stocks for FBgn0015550 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.40	Down
Head	1 ± 0	1 of 4	0.30	Down
Eye	2 ± 0	0 of 4	0.50	Down
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.50	None
Salivary gland	5 ± 2	0 of 4	0.97	None
Crop	4 ± 2	1 of 4	0.70	None
Midgut	13 ± 0	4 of 4	2.50	Up
Tubule	2 ± 0	0 of 4	0.40	Down
Hindgut	2 ± 0	0 of 4	0.40	Down
Heart	1 ± 0	0 of 4	0.23	Down
Fat body	3 ± 1	0 of 4	0.56	Down
Ovary	0 ± 0	0 of 4	0.20	Down
Testis	0 ± 0	0 of 4	0.10	Down
Male accessory glands	3 ± 1	0 of 4	0.70	None
Virgin spermatheca	0 ± 0	0 of 4	0.13	Down
Mated spermatheca	3 ± 1	0 of 4	0.62	None
Adult carcass	3 ± 1	0 of 4	0.60	None
Larval CNS	498 ± 79	4 of 4	91.91	Up
Larval Salivary gland	3 ± 1	0 of 4	0.69	None
Larval midgut	3 ± 1	2 of 4	0.67	None
Larval tubule	3 ± 1	0 of 4	0.70	None
Larval hindgut	2 ± 0	0 of 4	0.51	Down
Larval fat body	1 ± 0	0 of 4	0.30	Down
Larval trachea	4 ± 0	0 of 4	0.78	None
Larval carcass	0 ± 0	0 of 4	0.18	Down
S2 cells (growing)	0 ± 0	0 of 4	0.13	Down
Whole fly	5 ± 0	2 of 4

Looking for CG7659-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720