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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7659-RA through 18771 annotations produced 1 hits



biparous (tap):

Annotation Number : CG7659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015550
Gbrowse : chr3L:17352749-17354917 (+) // 99.82 //
Probeset : 1635026_at
Accessions : protein= NP_524124;, nucleotide= NM_079400;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription fa
FlyMine data for FBgn0015550.
BDGP gene expression has embryonic in situ data for tap: 42 pix of staining in 12 body parts.
Homophila reports that CG7659 is a close match (3e-12) to human gene NEUROD1;NIDDM (NP_002491), a gene associated with {Diabetes mellitus, noninsulin-dependent}, 125853 (3).
TRiP has 2 RNAi stocks for FBgn0015550 available for purchase.
VDRC has 5 RNAi stocks for FBgn0015550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40Down
Head1 01 of 4 0.30Down
Eye2 00 of 4 0.50Down
Thoracicoabdominal ganglion2 10 of 4 0.50None
Salivary gland5 20 of 4 0.97None
Crop4 21 of 4 0.70None
Midgut13 04 of 4 2.50Up
Tubule2 00 of 4 0.40Down
Hindgut2 00 of 4 0.40Down
Heart1 00 of 4 0.23Down
Fat body3 10 of 4 0.56Down
Ovary0 00 of 4 0.20Down
Testis0 00 of 4 0.10Down
Male accessory glands3 10 of 4 0.70None
Virgin spermatheca0 00 of 4 0.13Down
Mated spermatheca3 10 of 4 0.62None
Adult carcass3 10 of 4 0.60None
Larval CNS498 794 of 491.91Up
Larval Salivary gland3 10 of 4 0.69None
Larval midgut3 12 of 4 0.67None
Larval tubule3 10 of 4 0.70None
Larval hindgut2 00 of 4 0.51Down
Larval fat body1 00 of 4 0.30Down
Larval trachea4 00 of 4 0.78None
Larval carcass0 00 of 4 0.18Down
S2 cells (growing)0 00 of 4 0.13Down
Whole fly5 02 of 4

Looking for CG7659-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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