Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7664-RA through 18771 annotations produced 1 hits



cropped (crp):

Annotation Number : CG7664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001994
Gbrowse : chr2L:16264060-16287728 (-) // 100.0 //
Probeset : 1633011_at
Accessions : protein= NP_476605;, nucleotide= NM_057257;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0003702 // RNA polymerase II transcription factor activity // inferred from sequence or structural similarity /// 000370
FlyMine data for FBgn0001994.
BDGP gene expression has embryonic in situ data for crp: 14 pix of staining in 6 body parts.
BioGrid reports that CG7664 interacts with CG7838 CG9290 .
TRiP has 2 RNAi stocks for FBgn0001994 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001994 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain205 84 of 4 4.10Up
Head69 44 of 4 1.40Up
Eye64 44 of 4 1.28None
Thoracicoabdominal ganglion159 54 of 4 3.20Up
Salivary gland151 94 of 4 3.02Up
Crop68 94 of 4 1.40None
Midgut51 14 of 4 1.00None
Tubule27 24 of 4 0.50Down
Hindgut74 34 of 4 1.50Up
Heart35 34 of 4 0.71Down
Fat body98 114 of 4 1.96Up
Ovary79 34 of 4 1.60Up
Testis26 34 of 4 0.50Down
Male accessory glands171 74 of 4 3.40Up
Virgin spermatheca62 44 of 4 1.24None
Mated spermatheca70 144 of 4 1.40None
Adult carcass62 64 of 4 1.20None
Larval CNS355 594 of 4 7.06Up
Larval Salivary gland258 244 of 4 5.14Up
Larval midgut77 44 of 4 1.54Up
Larval tubule52 64 of 4 1.00None
Larval hindgut109 44 of 4 2.17Up
Larval fat body58 44 of 4 1.20None
Larval trachea87 94 of 4 1.74Up
Larval carcass58 44 of 4 1.16None
S2 cells (growing)247 64 of 4 4.92Up
Whole fly50 44 of 4

Looking for CG7664-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime