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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7670-RA through 18771 annotations produced 1 hits



CG7670 (WRNexo):

Annotation Number : CG7670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038608
Gbrowse : chr3R:14189965-14191859 (-) // 100.0 //
Probeset : 1628316_at
Accessions : protein= NP_001163646; /// NP_650715;, nucleotide= NM_001170175; /// NM_142458;
Pathway : exonucleolytic // inferred by curator /// 0006139 // nucleobase
Interpro : nucleoside
FlyMine data for FBgn0038608.
Homophila reports that CG7670 is a close match (5e-24) to human gene RECQ3;RECQL2;WRN (NP_000544), a gene associated with Werner syndrome, 277700 (3).
TRiP has 1 RNAi stocks for FBgn0038608 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038608 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head12 ± 12 of 4 0.00Down
Eye2 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland11 ± 61 of 4 0.04Down
Crop9 ± 11 of 4 0.00Down
Midgut26 ± 24 of 4 0.10Down
Tubule11 ± 50 of 4 0.00Down
Hindgut6 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body18 ± 64 of 4 0.06Down
Ovary784 ± 254 of 4 2.60Up
Testis46 ± 34 of 4 0.20Down
Male accessory glands7 ± 20 of 4 0.00Down
Virgin spermatheca13 ± 23 of 4 0.04Down
Mated spermatheca10 ± 11 of 4 0.03Down
Adult carcass16 ± 51 of 4 0.10Down
Larval CNS261 ± 214 of 4 0.87None
Larval Salivary gland210 ± 124 of 4 0.70Down
Larval midgut26 ± 24 of 4 0.09Down
Larval tubule18 ± 24 of 4 0.10Down
Larval hindgut75 ± 14 of 4 0.25Down
Larval fat body27 ± 44 of 4 0.10Down
Larval trachea124 ± 284 of 4 0.41Down
Larval carcass112 ± 94 of 4 0.37Down
S2 cells (growing)201 ± 84 of 4 0.67Down
Whole fly300 ± 124 of 4

Looking for CG7670-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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