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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7673-RA through 18771 annotations produced 1 hits



Ecdysone-dependent gene 78E (Edg78E):

Annotation Number : CG7673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000551
Gbrowse : chr3L:21289862-21290871 (-) // 100.0 //
Probeset : 1627026_at
Accessions : protein= NP_524198;, nucleotide= NM_079474;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0000551.
VDRC has 3 RNAi stocks for FBgn0000551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 13 of 4 1.30None
Head5 ± 01 of 4 1.20None
Eye4 ± 11 of 4 1.01None
Thoracicoabdominal ganglion13 ± 23 of 4 2.70None
Salivary gland24 ± 43 of 4 5.01Up
Crop6 ± 12 of 4 1.30None
Midgut3 ± 10 of 4 0.70None
Tubule5 ± 01 of 4 1.20Up
Hindgut6 ± 11 of 4 1.30None
Heart5 ± 11 of 4 1.08None
Fat body21 ± 34 of 4 4.38Up
Ovary2 ± 00 of 4 0.50Down
Testis5 ± 02 of 4 1.00None
Male accessory glands12 ± 20 of 4 2.60Up
Virgin spermatheca9 ± 13 of 4 2.00None
Mated spermatheca6 ± 10 of 4 1.41None
Adult carcass11 ± 21 of 4 2.30None
Larval CNS6 ± 14 of 4 1.43None
Larval Salivary gland10 ± 21 of 4 2.21None
Larval midgut6 ± 11 of 4 1.32None
Larval tubule9 ± 12 of 4 1.90None
Larval hindgut5 ± 02 of 4 1.13None
Larval fat body6 ± 30 of 4 1.30None
Larval trachea5 ± 31 of 4 1.09None
Larval carcass21 ± 24 of 4 4.45Up
S2 cells (growing)3 ± 00 of 4 0.77None
Whole fly4 ± 00 of 4

Looking for CG7673-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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