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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7675-RA through 18771 annotations produced 1 hits



chr3R:14203841-14206894 (-) // 100.0 // ():

Annotation Number : CG7675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632782_a_at
Accessions : protein= , nucleotide= NP_650717; /// NP_732334; /// NP_996233;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
FlyMine data for full length.
Homophila reports that CG7675 is a close match (8e-43) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head489 184 of 4 3.10Up
Eye781 254 of 4 4.94Up
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland8 30 of 4 0.05Down
Crop20 04 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule5 10 of 4 0.00Down
Hindgut334 74 of 4 2.10Up
Heart14 24 of 4 0.09Down
Fat body16 81 of 4 0.11Down
Ovary107 194 of 4 0.70None
Testis37 44 of 4 0.20Down
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca51 34 of 4 0.33Down
Mated spermatheca35 54 of 4 0.22Down
Adult carcass431 94 of 4 2.70Up
Larval CNS10 23 of 4 0.07Down
Larval Salivary gland17 23 of 4 0.11Down
Larval midgut6 20 of 4 0.04Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut305 264 of 4 1.93Up
Larval fat body13 10 of 4 0.10Down
Larval trachea635 734 of 4 4.02Up
Larval carcass596 834 of 4 3.77Up
S2 cells (growing)1 00 of 4 0.01Down
Whole fly158 174 of 4

Looking for CG7675-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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