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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7686-RA through 18771 annotations produced 1 hits



(CG7686):

Annotation Number : CG7686
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027525
Gbrowse : chr2R:6724510-6726231 (-) // 100.0 //
Probeset : 1638367_at
Accessions : protein= NP_610620;, nucleotide= NM_136776;
FlyMine data for FBgn0027525.
BDGP gene expression has embryonic in situ data for BcDNA:LD21529: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0027525 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1244 ± 364 of 4 1.80Up
Head1161 ± 484 of 4 1.70Up
Eye2147 ± 1004 of 4 3.11Up
Thoracicoabdominal ganglion1699 ± 324 of 4 2.50Up
Salivary gland1155 ± 594 of 4 1.68Up
Crop1198 ± 384 of 4 1.70Up
Midgut460 ± 154 of 4 0.70Down
Tubule938 ± 414 of 4 1.40Up
Hindgut905 ± 334 of 4 1.30Up
Heart1172 ± 1254 of 4 1.70Up
Fat body1098 ± 1764 of 4 1.59Up
Ovary580 ± 104 of 4 0.80Down
Testis126 ± 14 of 4 0.20Down
Male accessory glands1526 ± 1134 of 4 2.20Up
Virgin spermatheca1439 ± 744 of 4 2.09Up
Mated spermatheca1307 ± 714 of 4 1.89Up
Adult carcass995 ± 284 of 4 1.40Up
Larval CNS497 ± 514 of 4 0.72Down
Larval Salivary gland298 ± 284 of 4 0.43Down
Larval midgut442 ± 94 of 4 0.64Down
Larval tubule563 ± 294 of 4 0.80Down
Larval hindgut672 ± 444 of 4 0.97None
Larval fat body620 ± 794 of 4 0.90None
Larval trachea1168 ± 774 of 4 1.69Up
Larval carcass607 ± 434 of 4 0.88None
S2 cells (growing)965 ± 184 of 4 1.40Up
Whole fly690 ± 164 of 4

Looking for CG7686-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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