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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7691-RA through 18771 annotations produced 1 hits



(CG7691):

Annotation Number : CG7691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038626
Gbrowse : chr3R:14386003-14386987 (+) // 100.0 //
Probeset : 1626462_at
Accessions : protein= NP_650728;, nucleotide= NM_142471;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0038626.
Homophila reports that CG7691 is a close match (6e-11) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).
VDRC has 2 RNAi stocks for FBgn0038626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.11Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.50Down
Salivary gland2 ± 00 of 4 0.14Down
Crop6 ± 10 of 4 0.40Down
Midgut3 ± 10 of 4 0.20Down
Tubule1 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.11Down
Fat body2 ± 10 of 4 0.13Down
Ovary1 ± 00 of 4 0.10Down
Testis143 ± 44 of 4 9.60Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.06Down
Mated spermatheca3 ± 10 of 4 0.25Down
Adult carcass0 ± 00 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.13Down
Larval Salivary gland8 ± 21 of 4 0.57Down
Larval midgut6 ± 20 of 4 0.43Down
Larval tubule5 ± 10 of 4 0.40Down
Larval hindgut3 ± 10 of 4 0.23Down
Larval fat body29 ± 141 of 4 2.00None
Larval trachea3 ± 20 of 4 0.24Down
Larval carcass2 ± 10 of 4 0.19Down
S2 cells (growing)2 ± 00 of 4 0.15Down
Whole fly14 ± 13 of 4

Looking for CG7691-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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