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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7692-RA through 18771 annotations produced 1 hits



(CG7692):

Annotation Number : CG7692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036714
Gbrowse : chr3L:17346176-17351243 (+) // 100.0 //
Probeset : 1626561_at
Accessions : protein= NP_648972;, nucleotide= NM_140715;
Interpro : 0016740 // transferase activity // inferred from electronic annotation /// 0050524 // coenzyme-B sulfoethylthiotransfera
FlyMine data for FBgn0036714.
TRiP has 1 RNAi stocks for FBgn0036714 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036714 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 24 of 4 1.60Up
Head34 ± 04 of 4 0.80None
Eye45 ± 24 of 4 1.02None
Thoracicoabdominal ganglion81 ± 54 of 4 1.80Up
Salivary gland34 ± 61 of 4 0.77None
Crop29 ± 54 of 4 0.70None
Midgut17 ± 21 of 4 0.40Down
Tubule22 ± 13 of 4 0.50Down
Hindgut21 ± 13 of 4 0.50Down
Heart14 ± 24 of 4 0.32Down
Fat body27 ± 44 of 4 0.60Down
Ovary93 ± 54 of 4 2.10Up
Testis158 ± 14 of 4 3.50Up
Male accessory glands25 ± 34 of 4 0.60Down
Virgin spermatheca26 ± 14 of 4 0.58Down
Mated spermatheca25 ± 24 of 4 0.56Down
Adult carcass13 ± 31 of 4 0.30Down
Larval CNS112 ± 54 of 4 2.50Up
Larval Salivary gland34 ± 14 of 4 0.75None
Larval midgut16 ± 12 of 4 0.37Down
Larval tubule21 ± 12 of 4 0.50Down
Larval hindgut20 ± 53 of 4 0.46Down
Larval fat body49 ± 104 of 4 1.10None
Larval trachea26 ± 14 of 4 0.59Down
Larval carcass26 ± 13 of 4 0.59Down
S2 cells (growing)39 ± 34 of 4 0.87None
Whole fly45 ± 54 of 4

Looking for CG7692-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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