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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7700-RA through 18771 annotations produced 1 hits



Gos28 (Gos28):

Annotation Number : CG7700
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044871
Gbrowse : chr3R:14489463-14491024 (+) // 100.0 //
Probeset : 1638658_at
Accessions : protein= NP_650739;, nucleotide= NM_142482;
Pathway : 0000138 // Golgi trans cisterna // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // infe
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0044871.
TRiP has 1 RNAi stocks for FBgn0044871 available for purchase.
VDRC has 2 RNAi stocks for FBgn0044871 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 24 of 4 1.00None
Head128 14 of 4 0.80Down
Eye179 74 of 4 1.11None
Thoracicoabdominal ganglion160 44 of 4 1.00None
Salivary gland315 94 of 4 1.95Up
Crop181 114 of 4 1.10None
Midgut202 64 of 4 1.20Up
Tubule94 34 of 4 0.60Down
Hindgut183 44 of 4 1.10None
Heart153 34 of 4 0.95None
Fat body128 74 of 4 0.79Down
Ovary322 54 of 4 2.00Up
Testis127 24 of 4 0.80Down
Male accessory glands236 74 of 4 1.50Up
Virgin spermatheca159 64 of 4 0.98None
Mated spermatheca171 34 of 4 1.06None
Adult carcass116 74 of 4 0.70Down
Larval CNS135 54 of 4 0.84Down
Larval Salivary gland536 364 of 4 3.31Up
Larval midgut263 44 of 4 1.63Up
Larval tubule141 44 of 4 0.90None
Larval hindgut195 114 of 4 1.21None
Larval fat body309 134 of 4 1.90Up
Larval trachea203 324 of 4 1.25None
Larval carcass171 84 of 4 1.06None
S2 cells (growing)222 84 of 4 1.37Up
Whole fly162 74 of 4

Looking for CG7700-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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